This repository is a compilation of the documentation associated with the "Theme Collaboration Award" (2023) from Telethon Kids Institute.
This Biowiki page is intended to be a one-stop solution for getting started with Nextflow and running the nf-core pipelines for the Telethon Kids Institute infrastructure. The Biowiki documents the customisation and debugging of these pipelines within the TKI-infrastructure, and provides the relevant external resources. Including seminar summaries, a FAQ page is available, as well as tip pages which provide resources for those moving forward in their journey of pipeline utilisation, creation, and troubleshooting.
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Seminars 🎥
- Seminar 1: Introduction to Nextflow and nf-core
- Seminar 2: Introduction to nf-core RNAseq
- Seminar 3: Introduction to nf-core and differentialabundance
- Seminar 4: Introduction to nf-core smrnaeq pipeline and Nextflow Tower
- Seminar 5: Introduction to nf-core methylseq
- Seminar 6: Introdction to nf-core atacseq
- Seminar 7: Introduction to nf-core ampliseq
- Seminar 8: Introduction to nf-core mag pipeline and EVEREST
- Seminar 9: Introduction to nf-core and scrnaseq
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