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Wire up VDI client#549

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jernestmyers merged 78 commits intomainVEuPathDB/web-monorepo:mainfrom feature/vdi-client-workVEuPathDB/web-monorepo:feature/vdi-client-workCopy head branch name to clipboardApr 5, 2024

+8,657-499

Commits

Commits on Oct 2, 2023

• Initial VDI client commit

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Commits on Oct 3, 2023

• Add a rough addDataset API method

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Commits on Oct 6, 2023

• Ignore DS_Store files

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• Talk to vdi service in client

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Commits on Oct 12, 2023

• Render preliminarily dataset list and dataset details pages

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• Add more VDI endpoints, tweak types, tweak outputs

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Commits on Oct 13, 2023

• Wire up addDataset form upload with VDI

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Commits on Oct 16, 2023

• Route to dataset details when user uploads dataset

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Commits on Oct 17, 2023

• Add back projectIDs to dataset type, clean up code

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  dee7f61

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• Clean up code and types

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Commits on Oct 18, 2023

• Merge branch 'main' into feature/vdi-client-work

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• Wire up request to download VDI files

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Commits on Oct 19, 2023

• Improve vdi file download implementation

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Commits on Oct 20, 2023

• Wire up dataset sharing w/ VDI, preliminarily

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• Remove date and email from sharedWith list

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• Finish migrating all userDatasetServiceWrappers to VDI

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• Allow sharing dataset with multiple users

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Commits on Oct 23, 2023

• Refactor dataset download tables to include uploaded and processed zip files

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• Clean up vdi-to-legacy data transform, refactor statuses, implement user quota endpoint

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• Use userID in dataset details sharing

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Commits on Oct 24, 2023

• Disable recent uploads workspace tab and route

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• Hardcode accepted file types and disable more legacy UD endpoints

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Commits on Oct 25, 2023

• Begin status details overhaul

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• Replace fully legacy UD wrappers, assert vdiWdkService, remove ts-ignores

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• Resolve TS errors in genomics wdkService

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• Rough-in file listing endpoint and prep download UI changes

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Commits on Oct 26, 2023

• Refactor status details to reflect VDI statuses

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• Sync compatibility verbiage with status details

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• Remove isInstalled and isCompatible types from UserDataset

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  f171a24

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• Update datasetTypes for VDI

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• Fix unsharing bug and clean up types

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Commits on Oct 30, 2023

• Incorporate VDI api changes into client

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Commits on Oct 31, 2023

• Clean up types and simplify vdi service assertion

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• Improve api method name

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• Update compatibility to reflect dataset's status properties

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Commits on Nov 1, 2023

• Clean up VDI dataset details re: deps, status, download status, compatibility

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Commits on Nov 2, 2023

• Change datetime string from toISOString to toLocaleString

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Commits on Nov 9, 2023

• Address most PR feedback

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  6adcbf4

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• Refactor questions logic to render "Available searches"

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Commits on Nov 10, 2023

• Update GBrowseUrls for VDI response and new question for longest sequence

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Commits on Nov 16, 2023

• Replace use of var in variable declarations

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Commits on Dec 8, 2023

• Merge branch 'main' into feature/vdi-client-work

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Commits on Dec 12, 2023

• Merge remote-tracking branch 'origin/main' into feature/vdi-client-work

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Commits on Dec 13, 2023

• VDI: Allow vdi service url to be configured by deployment environment (#724)

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• Merge remote-tracking branch 'origin/main' into feature/vdi-client-work

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Commits on Dec 14, 2023

• Properly extend state of parent class

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  e8ff0b9

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• Update wdkService wrappers in mbio and clinepi

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Commits on Dec 20, 2023

• Merge remote-tracking branch 'origin/main' into feature/vdi-client-work

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Commits on Jan 3, 2024

• Create user-datasets-legacy package

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Commits on Jan 4, 2024

• Merge branch 'main' into feature/vdi-client-work

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• Merge branch 'main' into maintain-legacy-UDs-as-needed

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Commits on Jan 5, 2024

• Merge branch 'maintain-legacy-UDs-as-needed' into feature/vdi-client-work

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  48a7285

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• Configure EDA sites for user-datasets-legacy

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• Merge branch 'maintain-legacy-UDs-as-needed' of github.com:VEuPathDB/web-monorepo into maintain-legacy-UDs-as-needed

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• Configure legacy UDs in EDA sites

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Commits on Jan 9, 2024

• Add missing dependency to web-common

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Commits on Jan 12, 2024

• Merge branch 'main' into feature/vdi-client-work

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Commits on Jan 16, 2024

• Add type guards against undefined dataStatus

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Commits on Jan 24, 2024

• Merge pull request #752 from VEuPathDB/configure-legacy-UDs-in-EDA-sites

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Commits on Jan 25, 2024

• Merge branch 'main' into feature/vdi-client-work

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  4f088ac

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• fix imports re Mesa move

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• fix imports re Mesa move

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Commits on Jan 31, 2024

• Add VDI upload progress feedback to UI

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Commits on Feb 1, 2024

• Use modal for upload progress thereby blocking navigation

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• Remove setTimeout hack from submitForm's xhr logic

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Commits on Feb 2, 2024

• Refactor logic for dataset status and dataset compatibility statements

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Commits on Feb 5, 2024

• Refactor upload progress API changes

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Commits on Feb 6, 2024

• Fix addUserDataset endpoint path

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• Address feedback in dataset status and compatibility

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Commits on Feb 19, 2024

• Merge remote-tracking branch 'origin/main' into feature/vdi-client-work

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Commits on Feb 20, 2024

• Merge remote-tracking branch 'origin/feature/vdi-client-work' into feature/vdi-client-work

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Commits on Feb 28, 2024

• Merge branch 'main' into feature/vdi-client-work

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Commits on Feb 29, 2024

• Use URLSearchParams for more flexibility

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Commits on Mar 12, 2024

• Merge branch 'main' into feature/vdi-client-work

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  9c347bf

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• Port changes from legacy datasets

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Commits on Mar 25, 2024

• Merge remote-tracking branch 'origin/main' into feature/vdi-client-work

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Commits on Apr 2, 2024

• Merge main and resolve conflicts

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Commits on Apr 5, 2024

• Merge branch 'main' into feature/vdi-client-work

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