Don't require index template file if in count_only mode

WEHIGenomicsRnD · May 31, 2024 · c5e5eb4 · c5e5eb4
1 parent 48e8f8b
commit c5e5eb4
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -24,7 +24,7 @@ if (params.use_db) {
 workflow {
 
     // check that index template file is valid if not using db
-    if (!params.use_db) {
+    if (!params.use_db && !params.count_only) {
         new File(params.index_template_file).readLines().each { line ->
             if (line.split(",").size() < 3) {
                 error("""