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Release 0.0.6
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@drisso drisso released this 22 Jul 19:08
· 252 commits to master since this release
0.0.6
c7b195b

Changes in version 0.0.6

  • Added option for restoring zeroes after scaling step.
  • New argument format for imputation via impute_args.
  • Simplified ziber fnr estimation function - requires control genes.
  • Fixed bug when using plot functionality of filtering functions.
  • "Conditional" pam replaced with "Stratified" pam, clustering each bio-cross-batch condition separately, rather than simply each bio condition.
  • Simple FNR for filtering is now based on medians of natural log expression in "expressing" cells / robust to convergence issues.
  • Removed all sufficient thresholds for metric sample filter.
  • Added option to write normalized matrices to HDF5 file.
  • Added wrapper function get_normalized() to retrieve normalized data.
  • New biplot_interactive function to explore the results.
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