Merge pull request #13 from YosefLab/merge

Change file names.
YosefLab · Dec 13, 2024 · b738bc3 · b738bc3
2 parents 075a679 + 1f6d884
commit b738bc3
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Showing 7 changed files with 1,474 additions and 190 deletions.
diff --git a/.dvc/config b/.dvc/config
@@ -4,4 +4,5 @@
 ['remote "gdrive_remote"']
     url = gdrive://1MbX5Au5QRgagdXUaV9xvgLB9lOEVbfbQ
 ['remote "s3_remote"']
-    url = s3://dvc-filesystem/scvi-hub-large-files/
+    url = s3://dvc-filesystem/scvi-hub-large-files
+    region = us-west-1
diff --git a/data/.gitignore b/data/.gitignore
@@ -1,13 +1,18 @@
 /mouse_thymus_cite.h5mu
 /mouse_thymus_cite_totalvi
 /haniffa_covid_pbmc.h5mu
-/neurips_bone_marrow_cite.h5mu
-/heart_cell_atlas.h5mu
 /bone_marrow_cite_totalvi
 /heart_cell_atlas_scvi
 /heart_cell_atlas.h5ad
-/hlca_core.h5ad
 /hlca_reference_scanvi
-/test_data.h5ad
 /test_scvi
 /haniffa_covid_pbmc
+/bone_marrow_cite.h5mu
+/bone_marrow_cite.h5mu
+/bone_marrow_cite.h5mu
+/test.h5ad
+/test.h5ad
+/test.h5ad
+/human_lung_cell_atlas.h5ad
+/human_lung_cell_atlas.h5ad
+/human_lung_cell_atlas.h5ad
diff --git a/data/neurips_bone_marrow_cite.h5mu.dvc → data/bone_marrow_cite.h5mu.dvc b/data/neurips_bone_marrow_cite.h5mu.dvc → data/bone_marrow_cite.h5mu.dvc
@@ -2,4 +2,4 @@ outs:
 - md5: 3f68254232dfe342a45a612684f36d92
   size: 881794010
   hash: md5
-  path: neurips_bone_marrow_cite.h5mu
+  path: bone_marrow_cite.h5mu
diff --git a/data/heart_cell_atlas.h5mu.dvc b/data/heart_cell_atlas.h5mu.dvc
diff --git a/data/hlca_core.h5ad.dvc → data/human_lung_cell_atlas.h5ad.dvc b/data/hlca_core.h5ad.dvc → data/human_lung_cell_atlas.h5ad.dvc
@@ -2,4 +2,4 @@ outs:
 - md5: 923ab873d03cff49cfd53a9063e6c1ed
   size: 1940424488
   hash: md5
-  path: hlca_core.h5ad
+  path: human_lung_cell_atlas.h5ad
diff --git a/data/test_data.h5ad.dvc → data/test.h5ad.dvc b/data/test_data.h5ad.dvc → data/test.h5ad.dvc
@@ -2,4 +2,4 @@ outs:
 - md5: 91bb92467e4f291e0ba0c1663dfabc96
   size: 1008864
   hash: md5
-  path: test_data.h5ad
+  path: test.h5ad
diff --git a/src/scvi_hub_models/test.ipynb b/src/scvi_hub_models/test.ipynb