new environment for annotation #139
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,341 @@ | ||
| name: grace-annotation | ||
| channels: | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - alabaster=0.7.13 | ||
| - aom=3.5.0 | ||
| - app-model=0.1.4 | ||
| - appdirs=1.4.4 | ||
| - appnope=0.1.3 | ||
| - asciitree=0.3.3 | ||
| - asttokens=2.2.1 | ||
| - attrs=23.1.0 | ||
| - aws-c-auth=0.7.0 | ||
| - aws-c-cal=0.6.0 | ||
| - aws-c-common=0.8.23 | ||
| - aws-c-compression=0.2.17 | ||
| - aws-c-event-stream=0.3.1 | ||
| - aws-c-http=0.7.10 | ||
| - aws-c-io=0.13.28 | ||
| - aws-c-mqtt=0.8.14 | ||
| - aws-c-s3=0.3.13 | ||
| - aws-c-sdkutils=0.1.11 | ||
| - aws-checksums=0.1.16 | ||
| - aws-crt-cpp=0.20.3 | ||
| - aws-sdk-cpp=1.10.57 | ||
| - babel=2.12.1 | ||
| - backcall=0.2.0 | ||
| - backports=1.0 | ||
| - backports.functools_lru_cache=1.6.5 | ||
| - blosc=1.21.4 | ||
| - bokeh=3.2.0 | ||
| - brotli=1.0.9 | ||
| - brotli-bin=1.0.9 | ||
| - brotli-python=1.0.9 | ||
| - brunsli=0.1 | ||
| - bzip2=1.0.8 | ||
| - c-ares=1.19.1 | ||
| - c-blosc2=2.10.0 | ||
| - ca-certificates=2023.7.22 | ||
| - cachey=0.2.1 | ||
| - certifi=2023.7.22 | ||
| - cffi=1.15.1 | ||
| - cfgv=3.3.1 | ||
| - cfitsio=4.2.0 | ||
| - charls=2.4.2 | ||
| - charset-normalizer=3.2.0 | ||
| - click=8.1.4 | ||
| - cloudpickle=2.2.1 | ||
| - colorama=0.4.6 | ||
| - comm=0.1.3 | ||
| - contourpy=1.1.0 | ||
| - cytoolz=0.12.0 | ||
| - dask=2023.7.0 | ||
| - dask-core=2023.7.0 | ||
| - dav1d=1.2.1 | ||
| - debugpy=1.6.7 | ||
| - decorator=5.1.1 | ||
| - distlib=0.3.7 | ||
| - distributed=2023.7.0 | ||
| - docstring_parser=0.15 | ||
| - docutils=0.17.1 | ||
| - entrypoints=0.4 | ||
| - executing=1.2.0 | ||
| - expat=2.5.0 | ||
| - fasteners=0.17.3 | ||
| - filelock=3.12.2 | ||
| - font-ttf-dejavu-sans-mono=2.37 | ||
| - font-ttf-inconsolata=3.000 | ||
| - font-ttf-source-code-pro=2.038 | ||
| - font-ttf-ubuntu=0.83 | ||
| - fontconfig=2.14.2 | ||
| - fonts-conda-ecosystem=1 | ||
| - fonts-conda-forge=1 | ||
| - freetype=2.12.1 | ||
| - freetype-py=2.4.0 | ||
| - fsspec=2023.6.0 | ||
| - gettext=0.21.1 | ||
| - gflags=2.2.2 | ||
| - giflib=5.2.1 | ||
| - glib=2.76.4 | ||
| - glib-tools=2.76.4 | ||
| - glog=0.6.0 | ||
| - gmp=6.2.1 | ||
| - gmpy2=2.1.2 | ||
| - gst-plugins-base=1.22.4 | ||
| - gstreamer=1.22.4 | ||
| - hdf5=1.14.1 | ||
| - heapdict=1.0.1 | ||
| - hsluv=5.0.2 | ||
| - icu=72.1 | ||
| - identify=2.5.26 | ||
| - idna=3.4 | ||
| - imagecodecs=2023.1.23 | ||
| - imageio=2.31.1 | ||
| - imagesize=1.4.1 | ||
| - importlib-metadata=6.8.0 | ||
| - importlib_metadata=6.8.0 | ||
| - importlib_resources=6.0.0 | ||
| - in-n-out=0.1.8 | ||
| - ipykernel=6.24.0 | ||
| - ipython=8.14.0 | ||
| - ipython_genutils=0.2.0 | ||
| - jedi=0.18.2 | ||
| - jinja2=3.1.2 | ||
| - joblib=1.3.0 | ||
| - jsonschema=4.18.0 | ||
| - jsonschema-specifications=2023.6.1 | ||
| - jupyter_client=8.3.0 | ||
| - jupyter_core=5.3.1 | ||
| - jxrlib=1.1 | ||
| - kiwisolver=1.4.4 | ||
| - krb5=1.20.1 | ||
| - lazy_loader=0.2 | ||
| - lcms2=2.15 | ||
| - lerc=4.0.0 | ||
| - libabseil=20230125.3 | ||
| - libaec=1.0.6 | ||
| - libarrow=12.0.1 | ||
| - libavif=0.11.1 | ||
| - libblas=3.9.0 | ||
| - libbrotlicommon=1.0.9 | ||
| - libbrotlidec=1.0.9 | ||
| - libbrotlienc=1.0.9 | ||
| - libcblas=3.9.0 | ||
| - libclang=15.0.7 | ||
| - libclang13=15.0.7 | ||
| - libcrc32c=1.1.2 | ||
| - libcurl=8.1.2 | ||
| - libcxx=16.0.6 | ||
| - libdeflate=1.18 | ||
| - libedit=3.1.20191231 | ||
| - libev=4.33 | ||
| - libevent=2.1.12 | ||
| - libexpat=2.5.0 | ||
| - libffi=3.4.2 | ||
| - libgfortran=5.0.0 | ||
| - libgfortran5=12.2.0 | ||
| - libglib=2.76.4 | ||
| - libgoogle-cloud=2.12.0 | ||
| - libgrpc=1.54.2 | ||
| - libiconv=1.17 | ||
| - libjpeg-turbo=2.1.5.1 | ||
| - liblapack=3.9.0 | ||
| - libllvm15=15.0.7 | ||
| - libnghttp2=1.52.0 | ||
| - libogg=1.3.4 | ||
| - libopenblas=0.3.23 | ||
| - libopus=1.3.1 | ||
| - libpng=1.6.39 | ||
| - libpq=15.3 | ||
| - libprotobuf=3.21.12 | ||
| - libsodium=1.0.18 | ||
| - libsqlite=3.42.0 | ||
| - libssh2=1.11.0 | ||
| - libthrift=0.18.1 | ||
| - libtiff=4.5.1 | ||
| - libutf8proc=2.8.0 | ||
| - libvorbis=1.3.7 | ||
| - libwebp-base=1.3.1 | ||
| - libxcb=1.15 | ||
| - libxml2=2.11.4 | ||
| - libzlib=1.2.13 | ||
| - libzopfli=1.0.3 | ||
| - llvm-openmp=16.0.6 | ||
| - locket=1.0.0 | ||
| - lz4=4.3.2 | ||
| - lz4-c=1.9.4 | ||
| - magicgui=0.7.2 | ||
| - markdown-it-py=3.0.0 | ||
| - markupsafe=2.1.3 | ||
| - matplotlib-inline=0.1.6 | ||
| - mdurl=0.1.0 | ||
| - mkl=2022.2.1 | ||
| - mpc=1.3.1 | ||
| - mpfr=4.2.0 | ||
| - mpmath=1.3.0 | ||
| - msgpack-python=1.0.5 | ||
| - mypy_extensions=1.0.0 | ||
| - mysql-common=8.0.33 | ||
| - mysql-libs=8.0.33 | ||
| - napari=0.4.18 | ||
| - napari-console=0.0.8 | ||
| - napari-plugin-engine=0.2.0 | ||
| - napari-svg=0.1.10 | ||
| - ncurses=6.4 | ||
| - nest-asyncio=1.5.6 | ||
| - networkx=3.1 | ||
| - nodeenv=1.8.0 | ||
| - npe2=0.7.0 | ||
| - nspr=4.35 | ||
| - nss=3.89 | ||
| - numcodecs=0.11.0 | ||
| - numexpr=2.8.4 | ||
| - numpy=1.25.1 | ||
| - numpydoc=1.5.0 | ||
| - openjpeg=2.5.0 | ||
| - openssl=3.1.2 | ||
| - orc=1.9.0 | ||
| - packaging=23.1 | ||
| - pandas=2.0.3 | ||
| - parso=0.8.3 | ||
| - partd=1.4.0 | ||
| - pcre2=10.40 | ||
| - pexpect=4.8.0 | ||
| - pickleshare=0.7.5 | ||
| - pillow=10.0.0 | ||
| - pint=0.22 | ||
| - pip=23.1.2 | ||
| - pkgutil-resolve-name=1.3.10 | ||
| - platformdirs=3.10.0 | ||
| - ply=3.11 | ||
| - pooch=1.7.0 | ||
| - pre-commit=3.3.3 | ||
| - prompt-toolkit=3.0.39 | ||
| - prompt_toolkit=3.0.39 | ||
| - psutil=5.9.5 | ||
| - psygnal=0.9.1 | ||
| - pthread-stubs=0.4 | ||
| - ptyprocess=0.7.0 | ||
| - pure_eval=0.2.2 | ||
| - py-cpuinfo=9.0.0 | ||
| - pycparser=2.21 | ||
| - pydantic=1.10.10 | ||
| - pygments=2.15.1 | ||
| - pyopengl=3.1.6 | ||
| - pyproject_hooks=1.0.0 | ||
| - pyqt=5.15.7 | ||
| - pyqt5-sip=12.11.0 | ||
| - pysocks=1.7.1 | ||
| - pytables=3.8.0 | ||
| - python=3.11.4 | ||
| - python-build=0.10.0 | ||
| - python-dateutil=2.8.2 | ||
| - python-tzdata=2023.3 | ||
| - python_abi=3.11 | ||
| - pytomlpp=1.0.13 | ||
| - pytorch=2.0.0 | ||
| - pytz=2023.3 | ||
| - pywavelets=1.4.1 | ||
| - pyyaml=6.0 | ||
| - pyzmq=25.1.0 | ||
| - qt-main=5.15.8 | ||
| - qtconsole-base=5.4.3 | ||
| - qtpy=2.3.1 | ||
| - re2=2023.03.02 | ||
| - readline=8.2 | ||
| - referencing=0.29.1 | ||
| - requests=2.31.0 | ||
| - rich=13.4.2 | ||
| - rpds-py=0.8.10 | ||
| - scikit-image=0.21.0 | ||
| - scikit-learn=1.3.0 | ||
| - scipy=1.11.1 | ||
| - setuptools=68.0.0 | ||
| - shellingham=1.5.1 | ||
| - sip=6.7.9 | ||
| - six=1.16.0 | ||
| - sleef=3.5.1 | ||
| - snappy=1.1.10 | ||
| - snowballstemmer=2.2.0 | ||
| - sortedcontainers=2.4.0 | ||
| - sphinx=4.5.0 | ||
| - sphinxcontrib-applehelp=1.0.4 | ||
| - sphinxcontrib-devhelp=1.0.2 | ||
| - sphinxcontrib-htmlhelp=2.0.1 | ||
| - sphinxcontrib-jsmath=1.0.1 | ||
| - sphinxcontrib-qthelp=1.0.3 | ||
| - sphinxcontrib-serializinghtml=1.1.5 | ||
| - stack_data=0.6.2 | ||
| - superqt=0.4.1 | ||
| - sympy=1.12 | ||
| - tbb=2021.9.0 | ||
| - tblib=1.7.0 | ||
| - threadpoolctl=3.1.0 | ||
| - tifffile=2023.7.10 | ||
| - tk=8.6.12 | ||
| - toml=0.10.2 | ||
| - tomli=2.0.1 | ||
| - toolz=0.12.0 | ||
| - tornado=6.3.2 | ||
| - tqdm=4.65.0 | ||
| - traitlets=5.9.0 | ||
| - typer=0.9.0 | ||
| - typing-extensions=4.7.1 | ||
| - typing_extensions=4.7.1 | ||
| - tzdata=2023c | ||
| - ukkonen=1.0.1 | ||
| - virtualenv=20.24.3 | ||
| - vispy=0.12.2 | ||
| - wcwidth=0.2.6 | ||
| - wheel=0.40.0 | ||
| - wrapt=1.15.0 | ||
| - xorg-libxau=1.0.11 | ||
| - xorg-libxdmcp=1.1.3 | ||
| - xyzservices=2023.5.0 | ||
| - xz=5.2.6 | ||
| - yaml=0.2.5 | ||
| - zarr=2.15.0 | ||
| - zeromq=4.3.4 | ||
| - zfp=1.0.0 | ||
| - zict=3.0.0 | ||
| - zipp=3.16.0 | ||
| - zlib=1.2.13 | ||
| - zlib-ng=2.0.7 | ||
| - zstd=1.5.2 | ||
| - pip: | ||
| - absl-py==1.4.0 | ||
| - cachetools==5.3.1 | ||
| - cycler==0.11.0 | ||
| - fonttools==4.40.0 | ||
| - google-auth==2.21.0 | ||
| - google-auth-oauthlib==1.0.0 | ||
| - grace==0.0.1 | ||
|
There was a problem hiding this comment. I think the environment gets confused when instructed to install grace, which is not on Pip subprocess error:
ERROR: Could not find a version that satisfies the requirement grace==0.0.1 (from versions: ... )
ERROR: No matching distribution found for grace==0.0.1
failed
CondaEnvException: Pip failedThere was a problem hiding this comment. This is something we need to keep changing whenever we make a new environment (because we install grace with the pip . -e, it considers grace a "pip installed" package) There was a problem hiding this comment. It's fine to do so, given that README.md has all the detailed instructions. |
||
| - grpcio==1.56.0 | ||
| - iniconfig==2.0.0 | ||
| - lazy-loader==0.3 | ||
| - markdown==3.4.3 | ||
| - matplotlib==3.7.2 | ||
| - mrcfile==1.4.3 | ||
| - oauthlib==3.2.2 | ||
| - opencv-python==4.8.0.74 | ||
| - pluggy==1.2.0 | ||
| - protobuf==4.23.4 | ||
| - pyarrow==12.0.1 | ||
| - pyasn1==0.5.0 | ||
| - pyasn1-modules==0.3.0 | ||
| - pyparsing==3.0.9 | ||
| - pytest==7.4.0 | ||
| - requests-oauthlib==1.3.1 | ||
| - rsa==4.9 | ||
| - seaborn==0.12.2 | ||
| - starfile==0.4.12 | ||
| - tensorboard==2.13.0 | ||
| - tensorboard-data-server==0.7.1 | ||
| - torch==2.0.1 | ||
| - torch-geometric==2.3.1 | ||
| - torchvision==0.15.2 | ||
| - urllib3==1.26.16 | ||
| - werkzeug==2.3.6 | ||
| prefix: /Users/bcostagomes/anaconda3/envs/test_grace | ||
|
There was a problem hiding this comment. Does the prefix belong in the |
||
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I think we need to explicitly explain to the users what they will and won't be able to do when using either environment. I'm happy to change the README.md afterwards, there are other documentation issues that need to be added 😃