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Update publications.md
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cjain7 authored Dec 21, 2024
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Expand Up @@ -30,8 +30,10 @@ G Chandra, M Vasimuddin, S Misra, <u>C Jain</u>. _bioRxiv_
<a href="https://github.com/at-cg/mm2-plus" style="all: unset; color: inherit">Code</a>
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#### **2025**

* **Integer programming framework for pangenome-based genome inference** <br>
G Chandra, M Hossen, S Scholz, A Dilthey, D Gibney, <u>C Jain</u>. _bioRxiv_
G Chandra, M Hossen, S Scholz, A Dilthey, D Gibney, <u>C Jain</u>. _RECOMB (accepted)_
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<a href="https://doi.org/10.1101/2024.10.27.620212" style="all: unset; color: inherit">Preprint</a>
Expand All @@ -40,8 +42,6 @@ G Chandra, M Hossen, S Scholz, A Dilthey, D Gibney, <u>C Jain</u>. _bioRxiv_
<a href="https://github.com/at-cg/PHI" style="all: unset; color: inherit">Code</a>
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#### **2024**

* **Telomere-to-telomere assembly by preserving contained reads** <br>
Expand All @@ -68,7 +68,7 @@ D Mahajan, <u>C Jain</u>, N Kashyap. _IEEE ISIT_
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* **Haplotype-aware sequence alignment to pangenome graphs** <br>
G Chandra, D Gibney, <u>C Jain</u>. _Genome Research (RECOMB'24 special issue)_
G Chandra, D Gibney, <u>C Jain</u>. _Genome Research (extended abstract appeared in RECOMB'24)_
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<a href="https://drive.google.com/file/d/1hjP-yl7Xl1y-EPKXGhBEyY5A6eiVWMIV/view?usp=share_link" style="all: unset; color: inherit">Paper</a>
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