Merge pull request #229 from broadinstitute/ct-update-reqs

update dateutil and paramiko

conda-environment_py2.yaml

@@ -13,7 +13,7 @@ dependencies:
 - htslib=1.3.1=0
 - peewee=2.8.0
 - pysam=0.9.1
-- python-dateutil=2.3
+- python-dateutil=2.7.3
 - samtools=1.3.1
 - selscan=1.1.0b
 - biopython=1.67
@@ -34,7 +34,7 @@ dependencies:
 - ncurses=5.9
 - openssl=1.0.2h
 - pandas=0.18.1
-- paramiko=1.16.0
+- paramiko=2.4.1
 - pip=8.1.2
 - pycrypto=2.6.1
 - pygments=2.1.3

conda-environment_py3.yaml

@@ -13,7 +13,7 @@ dependencies:
 - htslib=1.3.1=0
 - peewee=2.8.0
 - pysam=0.9.1
-- python-dateutil=2.3
+- python-dateutil=2.7.3
 - samtools=1.3.1
 - selscan=1.1.0b
 - biopython=1.67
@@ -34,7 +34,7 @@ dependencies:
 - ncurses=5.9
 - openssl=1.0.2h
 - pandas=0.18.1
-- paramiko=1.16.0
+- paramiko=2.4.1
 - pip=8.1.2
 - pycrypto=2.6.1
 - pygments=2.1.3

requirements-docs.txt

@@ -2,7 +2,6 @@ biopython==1.65
 pysam==0.8.2.1
 numpy==1.8.0
 pandas==0.16.0
-paramiko==1.15.2
 crypto==1.3.4
 boltons==0.6.3
 peewee==2.8.0

travis/install-conda.sh

@@ -44,12 +44,12 @@ else # if it does not exist, we need to install miniconda
  conda config --add channels bioconda
  conda config --add channels r
  conda config --add channels conda-forge
- conda install -y -q conda=4.2 # pin to 4.2.* until this is fixed: https://github.com/conda/conda-build/issues/1666
+ conda install -y -q conda #=4.2 # pin to 4.2.* until this is fixed: https://github.com/conda/conda-build/issues/1666
  conda config --set auto_update_conda false
  conda install -y java-jdk==8.0.112
  conda install -y conda-build # needed to build recipe
  conda install -y anaconda-client # needed to upload build package to anaconda.org
  conda install -y -c conda-forge -f curl # the bioconda curl is broken as of 21 Feb 2017
 fi
 
-conda info -a # for debugging
+conda info -a # for debugging