Chore(pr: conflicts): Merge Erin doc updates

cpgweb/docs/overview.md

@@ -1,7 +1,7 @@
 # CPG Web Interface
 
 The interface provides a user friendly way to navigate, explore and download
-filtered `view` of the cellpainting gallery.
+filtered `view` of the Cell Painting Gallery.
 
 ## Filtered views
 

cpgweb/src/app/layout.tsx

@@ -49,35 +49,22 @@ export default function RootLayout({
  <PageHeader>
  <Announcement />
  <PageHeaderHeading className="hidden md:block">
- CellPainting Gallery
+ Cell Painting Gallery Tools
  </PageHeaderHeading>
  <PageHeaderHeading className="md:hidden">
- CellPainting Gallery
+ Cell Painting Gallery Tools
  </PageHeaderHeading>
  <PageHeaderDescription>
- The Cell Painting Gallery is a collection of image datasets
- created using the Cell Painting assay. The images of cells are
- captured by microscopy imaging, and reveal the response of
- various labeled cell components to whatever treatments are
- tested, which can include genetic perturbations, chemicals or
- drugs, or different cell types.
+ This alpha release contains a metadata searching tool that will search across metadata
+ files in the Cell Painting Gallery. Stay tuned for more tools in future releases.
  </PageHeaderDescription>
  <PageActions>
  <Link
- href="/docs"
+ href="https://broadinstitute.github.io/cellpainting-gallery/overview.html"
  className={cn(buttonVariants(), "rounded-[6px]")}
  >
  Docs
  </Link>
- <Link
- href="/examples"
- className={cn(
- buttonVariants({ variant: "outline" }),
- "rounded-[6px]"
- )}
- >
- Examples
- </Link>
  <ModeToggle />
  </PageActions>
  </PageHeader>

cpgweb/src/app/search/page.tsx

@@ -81,8 +81,10 @@ export default function DataTable() {
  <div className="w-full p-4">
  <div>
  <p className="text-sm text-muted-foreground py-2">
- Search for genes, compounds and other metadata across the CellPainting
- Gallery.
+ Search for genes, compounds and other metadata across the Cell Painting
+ Gallery. Searches through all metadata files in the Gallery and returns
+ the metadata files that contain the search term. See Cell Painting Gallery
+ documentation for information on file organization and download.
  </p>
  </div>
  <div className="flex flex-wrap items-center justify-between py-4">

docs/architecture.md

@@ -4,7 +4,7 @@
 
 ## CPG Data
 
-`cpgdata` provides data validation for the cellpainting gallery. It parses
+`cpgdata` provides data validation for the Cell Painting Gallery. It parses
 `inventory` files using a pydantic class. Then it generates a lot of
 `measurements` and saves all the measurement to parquet files. Finally, `rules`
 are applied on the generated `measurements` for validation.

docs/overview.md

@@ -1,7 +1,7 @@
 # Overview
 
 The project aims to provide tools and libraries for bootstrapping, maintaining
-and accessing the cellpainting gallery.
+and accessing the Cell Painting Gallery.
 
 # Design goals