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Merge pull request #86 from broadinstitute/dvc-location
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Update DVC location
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shntnu authored Jul 8, 2022
2 parents 58c86d5 + a23f910 commit 02a2b67
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2 changes: 1 addition & 1 deletion .dvc/config
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@@ -1,4 +1,4 @@
[core]
remote = cellpainting-datasets
['remote "cellpainting-datasets"']
url = s3://cellpainting-datasets/lincs-cell-painting/.dvc/cache
url = s3://cellpainting-gallery/cpg0004-lincs/broad/workspace/software/lincs-cell-painting_DVC
29 changes: 29 additions & 0 deletions profiles/README.md
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Expand Up @@ -118,6 +118,35 @@ git lfs pull
dvc pull
```

**Note:** The DVC remote is an AWS S3 bucket. You must have aws cli installed and configured (see details).

<details>

To access the files stored via DVC, you will need to created a AWS IAM user, who should, minimally, be able to Get objects and List buckets.
One way of achieving this is to attach the `AmazonS3ReadOnlyAccess` policy, which is:

```json
{
"Version": "2012-10-17",
"Statement": [
{
"Effect": "Allow",
"Action": [
"s3:Get*",
"s3:List*",
"s3-object-lambda:Get*",
"s3-object-lambda:List*"
],
"Resource": "*"
}
]
}
```

(Note that the `s3-object-lambda:Get*` and `s3-object-lambda:List*` are not required but they don't hurt)

</details>

### DeepProfiler-derived profiles

TBD
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