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Add reconstruct trios clps #1435

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Description

Adds 4 new CLPs:

  • ReconstructTriosFromBams
  • ReconstructTriosFromVCFs
  • InferSexFromBams
  • InferSexFromVCFs

The are supposed to do pretty much what their name claims.

I've tested these, but do not have a good sense of how to put in unit tests as they all need relatively large amounts of data on which to run. The first two use the same fingerprinting "haplotype_database" that the fingerprinting code does. You can find hg38 and hg19 ones here: gs://broad-references/

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