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PD-2757: Add Optimus as first task to the Slidetag WDL #1440

Merged
merged 31 commits into from
Jan 13, 2025
Merged

PD-2757: Add Optimus as first task to the Slidetag WDL #1440

merged 31 commits into from
Jan 13, 2025

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aawdeh
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@aawdeh aawdeh commented Dec 2, 2024

Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP team by tagging @broadinstitute/warp-admins in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

@github-actions GitHub Actions
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github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
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github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
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github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
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github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
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github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
Multiome.changelog.md has not been changed and needs to be updated
PairedTag.changelog.md has not been changed and needs to be updated
MultiSampleSmartSeq2SingleNucleus.changelog.md has not been changed and needs to be updated
Optimus.changelog.md has not been changed and needs to be updated
SlideSeq.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

@github-actions GitHub Actions
Copy link

github-actions bot commented Dec 2, 2024

Remember to squash merge!

@github-actions GitHub Actions
Copy link

Remember to squash merge!

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

aawdeh and others added 2 commits January 13, 2025 10:49
@aawdeh @ekiernan
Update pipelines/skylab/optimus/Optimus.changelog.md
1a20ddb 
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
@aawdeh @ekiernan
Update pipelines/skylab/multiome/Multiome.changelog.md
2e73148 
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
@github-actions GitHub Actions
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Remember to squash merge!

1 similar comment
@github-actions GitHub Actions
Copy link

Remember to squash merge!

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

Remember to squash merge!

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

aawdeh and others added 2 commits January 13, 2025 10:59
@aawdeh @ekiernan
Update pipelines/skylab/slideseq/SlideSeq.changelog.md
fa9c0f8 
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
@aawdeh @ekiernan
Update pipelines/skylab/smartseq2_single_nucleus_multisample/MultiSam…
9b98d3a 
…pleSmartSeq2SingleNucleus.changelog.md

Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
@github-actions GitHub Actions
Copy link

Remember to squash merge!

1 similar comment
@github-actions GitHub Actions
Copy link

Remember to squash merge!

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions GitHub Actions
Copy link

🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions GitHub Actions
Copy link

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

nikellepetrillo
nikellepetrillo approved these changes Jan 13, 2025
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thank you!!

@aawdeh aawdeh merged commit a4f334b into develop Jan 13, 2025
11 of 12 checks passed
@aawdeh aawdeh deleted the aa-optimus-slidetag branch January 13, 2025 19:53
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@ekiernan ekiernan ekiernan approved these changes

@nikellepetrillo nikellepetrillo nikellepetrillo approved these changes

@khajoue2 khajoue2 khajoue2 approved these changes

@jessicaway jessicaway Awaiting requested review from jessicaway

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@aawdeh @nikellepetrillo @khajoue2 @ekiernan @actions-user