fix: handle chembl approval enum oddities #277
Workflow file for this run
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| name: checks | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| name: test py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-2 | |
| AWS_DEFAULT_OUTPUT: text | |
| DISEASE_NORM_DB_URL: http://localhost:8002 | |
| THERAPY_NORM_DB_URL: http://localhost:8002 | |
| THERAPY_TEST: true | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python3 -m pip install ".[etl,test]" | |
| - name: Build local DynamoDB | |
| run: | | |
| chmod +x ./tests/scripts/dynamodb_run.sh | |
| ./tests/scripts/dynamodb_run.sh | |
| - name: Run tests | |
| run: python3 -m pytest | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-2 | |
| AWS_DEFAULT_OUTPUT: text | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: black | |
| uses: psf/black@stable | |
| - name: ruff | |
| uses: chartboost/ruff-action@v1 | |
| type_checks: | |
| name: type check py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.DUMMY_AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.DUMMY_AWS_SECRET_ACCESS_KEY }} | |
| AWS_DEFAULT_REGION: us-east-2 | |
| AWS_DEFAULT_OUTPUT: text | |
| strategy: | |
| matrix: | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: python3 -m pip install ".[dev]" | |
| - name: Check type correctness | |
| run: python3 -m mypy --ignore-missing-imports therapy/ |