tidied project structure

christianholland · Sep 18, 2021 · 3309563 · 3309563
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commit 3309563
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Showing 12 changed files with 9 additions and 9 deletions.
diff --git a/_bookdown.yml b/_bookdown.yml
@@ -2,13 +2,13 @@ book_filename: "thesis"
 chapter_name: "Chapter "
 rmd_files:
     - "index.Rmd"
-    - "01-intro.Rmd"
-    - "02-cross-species-benchmark.Rmd"
-    - "03-scrna-seq-benchmark.Rmd"
-    - "04-liver-disease-atlas.Rmd"
-    - "05-conclusion.Rmd"
-    - "06-appendix.Rmd"
-    - "99-references.Rmd"
+    - "sections/01-intro.Rmd"
+    - "sections/02-cross-species-benchmark.Rmd"
+    - "sections/03-scrna-seq-benchmark.Rmd"
+    - "sections/04-liver-disease-atlas.Rmd"
+    - "sections/05-conclusion.Rmd"
+    - "sections/06-appendix.Rmd"
+    - "sections/99-references.Rmd"
 download: [
     ["thesis.pdf", "PDF"],
     ["thesis.epub", "EPUB"],

diff --git a/index.Rmd b/index.Rmd
@@ -51,7 +51,7 @@ zusammenfassung: '`r if(knitr:::is_latex_output()) paste(readLines(here::here("p
 # Specify the location of the bibliography below
 bibliography: bib/references.bib
 # Download your specific csl file and refer to it in the line below.
-csl: csl/apa.csl
+csl: style/apa.csl
 lot: false
 lof: false
 ---

diff --git a/01-intro.Rmd → sections/01-intro.Rmd b/01-intro.Rmd → sections/01-intro.Rmd
diff --git a/02-cross-species-benchmark.Rmd → sections/02-cross-species-benchmark.Rmd b/02-cross-species-benchmark.Rmd → sections/02-cross-species-benchmark.Rmd
diff --git a/03-scrna-seq-benchmark.Rmd → sections/03-scrna-seq-benchmark.Rmd b/03-scrna-seq-benchmark.Rmd → sections/03-scrna-seq-benchmark.Rmd
diff --git a/04-liver-disease-atlas.Rmd → sections/04-liver-disease-atlas.Rmd b/04-liver-disease-atlas.Rmd → sections/04-liver-disease-atlas.Rmd
diff --git a/05-conclusion.Rmd → sections/05-conclusion.Rmd b/05-conclusion.Rmd → sections/05-conclusion.Rmd
diff --git a/06-appendix.Rmd → sections/06-appendix.Rmd b/06-appendix.Rmd → sections/06-appendix.Rmd
diff --git a/99-references.Rmd → sections/99-references.Rmd b/99-references.Rmd → sections/99-references.Rmd
diff --git a/csl/apa.csl → style/apa.csl b/csl/apa.csl → style/apa.csl
diff --git a/reedthesis.cls → style/reedthesis.cls b/reedthesis.cls → style/reedthesis.cls
diff --git a/template.tex b/template.tex
@@ -24,7 +24,7 @@
 %% Preamble
 %%
 % \documentclass{<something>} must begin each LaTeX document
-\documentclass[12pt,twoside]{reedthesis}
+\documentclass[12pt,twoside]{style/reedthesis}
 % Packages are extensions to the basic LaTeX functions. Whatever you
 % want to typeset, there is probably a package out there for it.
 % Chemistry (chemtex), screenplays, you name it.