The repository stores files that were used to perform analysis of homology determination between house mouse and zebrafish. The analysis was conducted in order to determine whether the search of synteny blocks is a suitable approach for finding homologous regions between genomes.
Directory descriptions:
- Figures/ contains all the images that are generated by the R script while performing analysis.
- Intermediate_data_files/ stores sample key file and contains file that stores synteny block positions between Mus musculus and Danio rerio organism genomes, and files that were created while performing R analysis (the outputs of different dataframes).
- Programs/ directory contains main R program files and Scikick reports.
Results of the analysis can be found here.