Mutation Mapping Analysis Pipeline for Pooled RNA-Seq
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Jun 12, 2024 - R
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danio-rerio
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This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
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Jun 13, 2023 - Shell
This code analyze the mortality (LC50) and General Morphological Score of embryos exposed to sediment and its pore water.
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Sep 25, 2024 - R
Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.
linux bash high-performance-computing chip-seq histone-modifications hisat2 sra developmental-biology zebrafish danio-rerio computational-genomics deeptools
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Aug 10, 2020
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
gem genome repeats ngs genome-annotation genome-browser bowtie zebrafish mappability alignability danio-rerio tsslab
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Nov 9, 2018 - Python
The repository stores files that are used to determine homology between Mus musculus and Danio rerio genomes by analyzing synteny blocks.
r chip-seq regeneration homology circos-plot danio-rerio mus-musculus tbx5 synteny-block symap cinteny
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Feb 12, 2023 - HTML
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