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1. E_coli_GEM_validation E_coli_GEM_validation Public

   Jupyter Notebook 4 1

2. biosynthetic_network_robustness biosynthetic_network_robustness Public

   This repository contains the code used in Bernstein DB, Dewhirst FE, Segre D. (2019) Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome. eLife. DOI:…

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3. metabolite2vec metabolite2vec Public

   Implementation of the skip-gram model to embed metabolites using metabolic reactions as their context

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4. co_culture_device co_culture_device Public

   This repository contains code, data, and protocols related to the BioMe co-culture device

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