Implementation of the skip-gram model to embed metabolites using metabolic reactions as their context
This repository contains:
environment.yml - an anaconda environment for running the jupyter notebook
metabolite2vec.ipynb - a jupyter notebook for running the code
reactions.tsv - a data file referenced in the code (from the modelSEED github)
compounds.tsv - a data file referenced in the code (from the modelSEED github)
For questions contact dbernste@bu.edu