fix datatypes #39

	name: pytest
	on: [push, pull_request]

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.8
	uses: actions/setup-python@v4
	with:
	python-version: 3.8
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install pipenv==2023.10.20
	pip install codecov==2.1.13 \
	pytest==7.4.3 \
	pytest-cov==4.1.0 \
	pytest-metadata==3.0.0 \
	pytest-mock==3.12.0 \
	pytest-subtests==0.11.0 \
	six==1.16.0
	pip install --no-index --no-deps resources/home/dnanexus/packages/*
	pipenv install --dev
	- name: Build bcftools
	run: \|
	wget https://github.com/samtools/bcftools/releases/download/1.18/bcftools-1.18.tar.bz2
	tar xf bcftools-1.18.tar.bz2
	cd bcftools-1.18
	./configure --prefix=/usr/local/ --disable-bz2 --disable-lzma
	sudo make
	sudo make install
	- name: Build htslib
	run: \|
	wget https://github.com/samtools/htslib/releases/download/1.18/htslib-1.18.tar.bz2
	tar xf htslib-1.18.tar.bz2
	cd htslib-1.18
	./configure --prefix=/usr/local/ --disable-bz2 --disable-lzma
	sudo make
	sudo make install
	- name: Test with pytest
	run: \|
	pytest -v --cov resources/home/dnanexus/generate_gcnv_bed/tests/unit/

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