Merge branch 'refactor' of https://github.com/eastgenomics/eggd_tso500 …

…into refactor

README.md

@@ -7,7 +7,7 @@ Runs the Illumina TSO500 local analysis app.
 
 ### Required
 - `TSO500_ruo` (`file`) - a zip file (originally provided by Illumina) containing the TSO500 local analysis app.
-- `input_files` (`array:files`) - raw sequencing data in tar files
+- `run_tar_data` (`array:files`) - raw sequencing data in tar files
 
 ### Optional
 - `samplesheet` (`file`) - samplesheet to use for demultiplexing and analysis, will use the one in the run data if not provided
@@ -298,4 +298,4 @@ output_folder/
 
 ## This app was created by East Genomics GLH
 
-[user-guide]: https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/trusight/trusight-oncology-500/trusight-oncology-500-local-app-v2.2-user-guide-1000000137777-01.pdf
+[user-guide]: https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/trusight/trusight-oncology-500/trusight-oncology-500-local-app-v2.2-user-guide-1000000137777-01.pdf