Merge pull request #13 from eastgenomics/refactor

Add --overwrite to dx download (#13)
eastgenomics · Nov 8, 2023 · d6ef181 · d6ef181
2 parents e64305a + 331ff48
commit d6ef181
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diff --git a/README.md b/README.md
@@ -1,4 +1,4 @@
-# TSO500 v2.0
+# TSO500 v2.0.0
 
 ## What does this app do?
 Runs the Illumina TSO500 local analysis app.

diff --git a/src/code.sh b/src/code.sh
@@ -105,7 +105,7 @@ _get_samplesheet() {
     if [[ "$samplesheet" ]]; then
         # using provided samplesheet
         echo "Using provided sample sheet: ${samplesheet_name}"
-        dx download "$samplesheet" -o runfolder/SampleSheet.csv
+        dx download "$samplesheet" --overwrite -o runfolder/SampleSheet.csv
     elif [[ $(find ./ -regextype posix-extended  -iregex '.*sample[-_ ]?sheet.csv$') ]]; then
         # Sample sheet not given, try finding it in the run folder
         # Use regex to account for anything named differently