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@CasperWA CasperWA released this 06 Feb 12:27
· 326 commits to master since this release
v0.5.0
0b811b9

Several fixes and updates

Several fixes and updates have been implemented in this update. See below for an overview.

Changelog

v0.5.0 (2023-02-06)

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Fixed bugs:

  • LegacyVersion does not exist in packaging.version #540
  • ontodoc: Expect is_instance_of property to be iterable #506
  • Reinstate images/material.png #495

Closed issues:

  • Newest pylint (2.15.4) has intriduced some new rules. #534
  • sync_attributes according to emmo convention regenerates a new iri even if it already has a valid one #525
  • Remove dependency on LegacyVersion of packaging #514
  • pytests are importing packaging 22.0 even though it is not allowed in requirements #513
  • ontodoc: adding annotations that are not strings fail #510
  • get_by_label_all only works after sync_attributes #502
  • excel2onto: support updating ontology #501
  • excel2onto: allow to use prefLabel already in imported ontologies #500
  • Drop Python 3.6 support - extend Python >3.7 support #486
  • Update pypi-release github action #482
  • Make workflows dispatchable #481
  • excel2onto: Read catalog file for imported ontology #474
  • Give option to write_catalog for writing relative paths #473
  • excel2onto: add choice of prefix for imported ontologies #467

Merged pull requests:

v0.4.0 (2022-10-04)

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Fixed bugs:

  • Update repo files with new repo name #479
  • Pre-commit hook bandit failing #478
  • Fix publish/release workflow #476
  • excel2onto: not all relations are included in the generated ontology #457
  • Unexpected behaviour of get_unabbreviated_triples() #454
  • Edge without label crash the graph creation #397

Closed issues:

  • excel2onto: restrictions does not allow for using "emmo:hasProcessOutput some xx" #464
  • EMMO is updated to beta4, and now documentation fails #440
  • some ObjectProperties from EMMO-beta-4.0 cause errors in OntoGraph #429
  • Excelparser does not write catalog file correctly #421
  • Add support for prefix #416
  • Pre.commit failed with ontology.py #415
  • visualization of EMMO based ontology #412
  • Avoid infinite recursion when loading catalog file #369
  • Excelparser: Automatize emmo-based? #335
  • What are the applications of EMMO for materials informatics? #325
  • Provide 'support' for same entities with different namespaces #128
  • Remove deprecated emmo/ontograph.py that uses pydot #103

Merged pull requests:

v0.3.1 (2022-05-08)

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Merged pull requests:

v0.3.0 (2022-05-05)

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Fixed bugs:

  • Documentation is currently not building #407
  • Pytest is currently failing #384
  • permission denied when working with temporary file #313

Closed issues:

  • Make get_descendants(levels=1) #403
  • Add functionality for setting name part of IRI to prefLabel #398
  • Generate excelsheet from ontology. #394
  • Return a list of the concepts that are disregarded during when converting from excel with -force argument #393
  • Demo - Broken ontology URLs #390
  • Excelparser: how to handle entities that already exist in one of the imported ontologies? #334

Merged pull requests:

v0.2.0 (2022-03-02)

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Implemented enhancements:

  • spaces before or after word in prefLabel makes excelparser fail #332
  • Make EMMOntopy PyPi #268
  • Use pre-commit #243
  • Standard dunder/magic methods for Ontology #228
  • Update code styling and linting #223
  • Fix checking PR body & improve error message in CD #318 (CasperWA)

Fixed bugs:

  • GH GraphQL type issue for auto-merge workflow #374
  • Missing warning for excel parser relations and problem with "nan" #365
  • Seting metadata in excelparser fails if there are no imported ontologies. #331
  • Edge-case fails CD workflow for dependabot #319
  • Ontodoc failing due to wrong rdflib import #306
  • Overwriting get_triples() method #280
  • OpenModel logo not loading in README #278
  • Disable FOAF test as xmlns.com is down #276

Closed issues:

  • Use TEAM 4.0[bot] for GH Actions jobs #352
  • _get_triples_spo take argumens s, and p, not subject and predicate #350
  • Add --force to excelparser #333
  • Cannot load ontology in Windows. #328
  • make get_ontology accept 'PosixPath' #326
  • Make EMMOntoPy baseexception and basewarning #321
  • get_by_label crash if not str #311
  • make excel parser that creates and ontology from a filled excel file #302
  • Check out how to get version of ontology #299
  • Let ontology.new_entity acccept one or more parents directly #294
  • Make ManchesterSyntaxParser that returns Owlready2 #293
  • onto.new_entity should throw Error if label name consists of more than one word #290
  • ReadTheDocs #288
  • Add logo to README #287
  • Write EMMO-python is deprecated and link to EMMOtopy on PyPi #269
  • Consider MarkDown header styling #231

Merged pull requests:

v0.1.3 (2021-10-27)

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v0.1.2 (2021-10-27)

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v0.1.1 (2021-10-27)

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v0.1.0 (2021-10-27)

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Implemented enhancements:

  • "Warning" Importing from collections #236

Fixed bugs:

  • Loading ontologies that do not import skos fails #261
  • Fix documentation build warnings #250
  • Fix images in documentation #233
  • Circular reference from Owlready2 #210

Closed issues:

  • Write up transfer from EMMOpython to EMMOntoPy i README.md #267
  • Add test to emmocheck for upcoming EMMO #257
  • Add packaging as dependency in requirements #255
  • Add CI check for building documentation #244
  • Add OpenModel as contributing project #237
  • Update public documentation to new framework #234
  • Automate documentation releases #232
  • Update name of EMMO to Elemental Multiperspective Material Ontology #230
  • Tidy up unittests #220
  • Remove importability of sub-factpluspluswrapper folders #213
  • Make function that automatically loads emmo #209
  • Require rdflib>5.0.0? #206
  • change package name #205
  • test_catalog fails because seraching for .owl in emmo/master #203
  • Consider using mike for versioned documentation #197
  • Add a test that checks that loading of non-EMMO based ontologies work - e.g. do not require skos:prefLabel #196
  • Setup Materials for MkDocs framework #195
  • Clean up demo, examples and docs #193
  • Formalize review process with checklists #190
  • funksjon ontology.add_class(label, parent) #183

Merged pull requests:

v1.0.1b (2021-07-01)

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Closed issues:

  • Correct updating of catalog in ontology.load #188

Merged pull requests:

* This Changelog was automatically generated by github_changelog_generator

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