Merge pull request #29418 from geneontology/issue-20661b

Updated defs. Fixes #20661

src/ontology/go-edit.obo

@@ -225807,7 +225807,7 @@ creation_date: 2013-09-05T20:23:45Z
 id: GO:0036423
 name: hexaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 3 isopentenyl diphosphate = 3 diphosphate + all-trans-hexaprenyl diphosphate." [EC:2.5.1.83, RHEA:27559]
+def: "Catalysis of the reaction: (2E,6E)-farnesyl diphosphate + 3 isopentenyl diphosphate = 3 diphosphate + all-trans-hexaprenyl diphosphate." [RHEA:27559]
 synonym: "hexaprenyl diphosphate synthase activity" BROAD [EC:2.5.1.83]
 synonym: "hexaprenyl pyrophosphate synthetase activity" BROAD [EC:2.5.1.83]
 synonym: "HexPS activity" EXACT [EC:2.5.1.83]
@@ -296455,7 +296455,7 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 id: GO:0047863
 name: dimethylallylcistransferase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + neryl diphosphate." [EC:2.5.1.28, RHEA:11328]
+def: "Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + neryl diphosphate." [RHEA:11328]
 synonym: "dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallylcistransferase activity" RELATED [EC:2.5.1.28]
 synonym: "neryl-diphosphate synthase activity" RELATED [EC:2.5.1.28]
 xref: EC:2.5.1.28
@@ -340823,7 +340823,7 @@ replaced_by: GO:0052919
 id: GO:0052922
 name: hexaprenyl diphosphate synthase (geranylgeranyl-diphosphate specific) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: geranylgeranyl diphosphate + 2 isopentenyl diphosphate = 2 diphosphate + all-trans-hexaprenyl diphosphate." [RHEA:27555]
+def: "Catalysis of the reaction: 2 isopentenyl diphosphate + (2E,6E,10E)-geranylgeranyl diphosphate = all-trans-hexaprenyl diphosphate + 2 diphosphate." [RHEA:27555]
 synonym: "(all-E) hexaprenyl diphosphate synthase activity" BROAD [EC:2.5.1.82]
 synonym: "(all-trans)-hexaprenyl-diphosphate synthase activity" BROAD [EC:2.5.1.82]
 synonym: "hexaprenyl diphosphate synthase activity" BROAD [EC:2.5.1.82]
@@ -340840,7 +340840,7 @@ id: GO:0052923
 name: all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
 namespace: molecular_function
 alt_id: GO:0050347
-def: "Catalysis of the reaction: geranyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-nonaprenyl diphosphate." [RHEA:27563]
+def: "Catalysis of the reaction: 7 isopentenyl diphosphate + (2E)-geranyl diphosphate = all-trans-nonaprenyl diphosphate + 7 diphosphate." [RHEA:27563]
 synonym: "(E)-octaprenyl-diphosphate:isopentenyl-diphosphate octaprenyltranstransferase activity" RELATED []
 synonym: "all-trans-nonaprenyl-diphosphate synthase activity" RELATED []
 synonym: "nonaprenyl diphosphate synthase activity" BROAD [EC:2.5.1.84]
@@ -340870,7 +340870,7 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 id: GO:0052924
 name: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: geranylgeranyl diphosphate + 5 isopentenyl diphosphate = 5 diphosphate + all-trans-nonaprenyl diphosphate." [RHEA:27594]
+def: "Catalysis of the reaction: 5 isopentenyl diphosphate + (2E,6E,10E)-geranylgeranyl diphosphate = all-trans-nonaprenyl diphosphate + 5 diphosphate." [RHEA:27594]
 synonym: "nonaprenyl diphosphate synthase activity" BROAD [EC:2.5.1.85]
 synonym: "solanesyl diphosphate synthase activity" BROAD [EC:2.5.1.85]
 synonym: "solanesyl diphosphate synthetase activity" BROAD [EC:2.5.1.85]
@@ -414240,7 +414240,7 @@ creation_date: 2012-03-15T01:00:20Z
 id: GO:0097269
 name: all-trans-decaprenyl-diphosphate synthase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + 7 isopentenyl diphosphate = 7 diphosphate + all-trans-decaprenyl diphosphate." [GOC:mw, PMID:16262699, RHEA:27802]
+def: "Catalysis of the reaction: 7 isopentenyl diphosphate + (2E,6E)-farnesyl diphosphate = all-trans-decaprenyl diphosphate + 7 diphosphate." [PMID:16262699, RHEA:27802]
 synonym: "(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase activity" EXACT []
 synonym: "2-trans,6-trans-farnesyl diphosphate activity" EXACT []
 synonym: "decaprenyl pyrophosphate synthetase activity" BROAD [EC:2.5.1.91]
@@ -430011,7 +430011,7 @@ id: GO:0102059
 name: (2Z,6Z)-farnesyl diphosphate synthase activity
 namespace: molecular_function
 alt_id: GO:0102192
-def: "Catalysis of the reaction: dimethylallyl diphosphate + 2 isopentenyl diphosphate = (2Z,6Z)-farnesyl diphosphate + 2 diphosphate." [RHEA:27810]
+def: "Catalysis of the reaction: 2 isopentenyl diphosphate + dimethylallyl diphosphate = (2Z,6Z)-farnesyl diphosphate + 2 diphosphate." [RHEA:27810]
 synonym: "2-cis,6-cis-farnesyl pyrophosphate synthase activity" EXACT []
 synonym: "cis,cis-farnesyl diphosphate synthase activity" EXACT [EC:2.5.1.92]
 synonym: "neryl-diphosphate:isopentenyl-diphosphate cistransferase activity" NARROW []