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Obsoleted 2 terms; changed 1 term; #28380 #29389

Merged

raymond91125 merged 1 commit into master from issue-28380-merge

Dec 7, 2024

Contributor

raymond91125 commented Dec 7, 2024

No description provided.


          Obsoleted 2 terms; changed 1 term; #28380

ec000f5

github-actions bot commented Dec 7, 2024

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-07/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-07/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

[heparan sulfate]-glucosamine 3-sulfotransferase activity `http://purl.obolibrary.org/obo/GO_0008467`

Removed

[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity definition "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. The (heparan sulfate)-glucosamine 3-sulfate has a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S."
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_broad_synonym "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase"
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "MetaCyc:2.8.2.23-RXN"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "isoform/isozyme 1 (3-OST-1, HS3ST1)"
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "RHEA:15461"
- source "skos:broadMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "3'-phosphoadenylyl-sulfate:heparin-glucosamine 3-O-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_exact_synonym "[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "glucosaminyl 3-O-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.23"
[heparan sulfate]-glucosamine 3-sulfotransferase activity label "heparan sulfate 3-sulfotransferase 1 activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "3-OST-1 activity"
- database_cross_reference "EC:2.8.2.23"

Added

[heparan sulfate]-glucosamine 3-sulfotransferase activity has_narrow_synonym "[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "EC:2.8.2.30"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity label "[heparan sulfate]-glucosamine 3-sulfotransferase activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity definition "Catalysis of the reaction: alpha-D-glucosaminyl-heparan sulfate + 3'-phosphoadenylyl sulfate = 3-sulfo-alpha-D-glucosaminyl-heparan sulfate + adenosine 3',5'-bisphosphate + H+."
- database_cross_reference "RHEA:15461"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "MetaCyc:2.8.2.30-RXN"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "RHEA:15461"
- source "skos:exactMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "glucosaminyl 3-O-sulfotransferase activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_narrow_synonym "[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "MetaCyc:2.8.2.23-RXN"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "EC:2.8.2.29"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "3-OST activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_related_synonym "3'-phosphoadenylyl-sulfate:heparin-glucosamine 3-O-sulfotransferase activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "MetaCyc:2.8.2.29-RXN"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity database_cross_reference "EC:2.8.2.23"
- source "skos:narrowMatch"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_narrow_synonym "[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity"
[heparan sulfate]-glucosamine 3-sulfotransferase activity has_broad_synonym "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase"

obsolete heparan sulfate 3-sulfotransferase 2 activity `http://purl.obolibrary.org/obo/GO_0033871`

Removed

obsolete heparan sulfate 3-sulfotransferase 2 activity has_related_synonym "3-OST-2"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity database_cross_reference "MetaCyc:2.8.2.29-RXN"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_broad_synonym "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity database_cross_reference "RHEA:15461"
- source "skos:broadMatch"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_related_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 activity"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_broad_synonym "glucosaminyl 3-O-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity definition "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. Modifies selected glucosamine residues preceded by GlcA2S."
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_related_synonym "isoform/isozyme 2 (3-OST-2, HS3ST2)"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_related_synonym "glucosaminyl 3-O-sulfotransferase 2 activity"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity label "heparan sulfate 3-sulfotransferase 2 activity"
obsolete heparan sulfate 3-sulfotransferase 2 activity has_broad_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf heparan sulfate sulfotransferase activity
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf has_participant some 3'-phosphonato-5'-adenylyl sulfate(4-)
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf has_participant some heparan sulfate alpha-D-glucosaminide polyanion
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf has_participant some adenosine 3',5'-bismonophosphate(4-)
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf has_participant some heparan sulfate alpha-D-glucosaminide 3-sulfate polyanion
obsolete heparan sulfate 3-sulfotransferase 2 activity SubClassOf has_participant some hydron

Added

obsolete heparan sulfate 3-sulfotransferase 2 activity label "obsolete heparan sulfate 3-sulfotransferase 2 activity"
obsolete heparan sulfate 3-sulfotransferase 2 activity definition "OBSOLETE. Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. Modifies selected glucosamine residues preceded by GlcA2S."
- database_cross_reference "EC:2.8.2.29"
obsolete heparan sulfate 3-sulfotransferase 2 activity term replaced by "GO:0008467"
obsolete heparan sulfate 3-sulfotransferase 2 activity comment "The reason for obsoletion is that the term represents the same [heparan sulfate]-glucosamine 3-sulfotransferase activity as GO:0008467."
obsolete heparan sulfate 3-sulfotransferase 2 activity deprecated true

obsolete heparan sulfate 3-sulfotransferase 3 activity `http://purl.obolibrary.org/obo/GO_0033872`

Removed

obsolete heparan sulfate 3-sulfotransferase 3 activity definition "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+."
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "glucosaminyl 3-O-sulfotransferase 3a, 3b activity"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A activity"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "3-OST-3"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity label "heparan sulfate 3-sulfotransferase 3 activity"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3 activity"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity database_cross_reference "RHEA:15461"
- source "skos:broadMatch"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "isoform/isozyme 3a and 3b (3-OST-3A, 3-OST-3B, HS3ST3A, HS3ST3B)"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity database_cross_reference "MetaCyc:2.8.2.30-RXN"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_broad_synonym "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity has_related_synonym "glucosaminyl 3-O-sulfotransferase 3 activity"
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf heparan sulfate sulfotransferase activity
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf has_participant some heparan sulfate alpha-D-glucosaminide polyanion
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf has_participant some heparan sulfate alpha-D-glucosaminide 3-sulfate polyanion
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf has_participant some 3'-phosphonato-5'-adenylyl sulfate(4-)
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf has_participant some hydron
obsolete heparan sulfate 3-sulfotransferase 3 activity SubClassOf has_participant some adenosine 3',5'-bismonophosphate(4-)

Added

obsolete heparan sulfate 3-sulfotransferase 3 activity term replaced by "GO:0008467"
obsolete heparan sulfate 3-sulfotransferase 3 activity comment "The reason for obsoletion is that the term represents the same [heparan sulfate]-glucosamine 3-sulfotransferase activity as GO:0008467."
obsolete heparan sulfate 3-sulfotransferase 3 activity definition "OBSOLETE. Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+."
- database_cross_reference "EC:2.8.2.30"
obsolete heparan sulfate 3-sulfotransferase 3 activity deprecated true
obsolete heparan sulfate 3-sulfotransferase 3 activity label "obsolete heparan sulfate 3-sulfotransferase 3 activity"

raymond91125 merged commit 8e7a72e into master

6 checks passed

raymond91125 deleted the issue-28380-merge branch

December 7, 2024 01:54

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