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Obsoleted 2 terms; changed 1 term; #28380 #29389

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Dec 7, 2024
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Obsoleted 2 terms; changed 1 term; #28380 #29389

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67 changes: 28 additions & 39 deletions src/ontology/go-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -79308,21 +79308,26 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i

[Term]
id: GO:0008467
name: heparan sulfate 3-sulfotransferase 1 activity
namespace: molecular_function
def: "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. The (heparan sulfate)-glucosamine 3-sulfate has a substrate consensus sequence of Glc(N2S>NAc)+/-6S GlcA GlcN2S*+/-6S GlcA>IdoA+/-2S Glc(N2S/NAc)+/-6S." [EC:2.8.2.23]
synonym: "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase" BROAD [EC:2.8.2.23]
synonym: "3'-phosphoadenylyl-sulfate:heparin-glucosamine 3-O-sulfotransferase activity" RELATED [EC:2.8.2.23]
synonym: "3-OST-1 activity" RELATED [EC:2.8.2.23]
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity" EXACT []
synonym: "glucosaminyl 3-O-sulfotransferase activity" RELATED [EC:2.8.2.23]
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity" RELATED [EC:2.8.2.23]
name: [heparan sulfate]-glucosamine 3-sulfotransferase activity
namespace: molecular_function
def: "Catalysis of the reaction: alpha-D-glucosaminyl-[heparan sulfate](n) + 3'-phosphoadenylyl sulfate = 3-sulfo-alpha-D-glucosaminyl-[heparan sulfate](n) + adenosine 3',5'-bisphosphate + H+." [RHEA:15461]
synonym: "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase" BROAD []
synonym: "3'-phosphoadenylyl-sulfate:heparin-glucosamine 3-O-sulfotransferase activity" RELATED []
synonym: "3-OST activity" RELATED []
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity" NARROW []
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity" NARROW []
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity" NARROW []
synonym: "glucosaminyl 3-O-sulfotransferase activity" RELATED []
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity" RELATED []
synonym: "heparin-glucosamine 3-O-sulfotransferase activity" RELATED []
synonym: "heparin-glucosamine 3-O-sulphotransferase activity" RELATED []
synonym: "isoform/isozyme 1 (3-OST-1, HS3ST1)" RELATED [EC:2.8.2.23]
xref: EC:2.8.2.23
xref: MetaCyc:2.8.2.23-RXN
xref: RHEA:15461 {source="skos:broadMatch"}
xref: EC:2.8.2.23 {source="skos:narrowMatch"}
xref: EC:2.8.2.29 {source="skos:narrowMatch"}
xref: EC:2.8.2.30 {source="skos:narrowMatch"}
xref: MetaCyc:2.8.2.23-RXN {source="skos:narrowMatch"}
xref: MetaCyc:2.8.2.29-RXN {source="skos:narrowMatch"}
xref: MetaCyc:2.8.2.30-RXN {source="skos:narrowMatch"}
xref: RHEA:15461 {source="skos:exactMatch"}
is_a: GO:0034483 ! heparan sulfate sulfotransferase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28380" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28762" xsd:anyURI
Expand Down Expand Up @@ -198139,45 +198144,29 @@ is_a: GO:0008146 ! sulfotransferase activity

[Term]
id: GO:0033871
name: heparan sulfate 3-sulfotransferase 2 activity
name: obsolete heparan sulfate 3-sulfotransferase 2 activity
namespace: molecular_function
def: "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. Modifies selected glucosamine residues preceded by GlcA2S." [EC:2.8.2.29]
synonym: "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity" BROAD [EC:2.8.2.29]
synonym: "3-OST-2" RELATED [EC:2.8.2.29]
def: "OBSOLETE. Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+. Modifies selected glucosamine residues preceded by GlcA2S." [EC:2.8.2.29]
comment: The reason for obsoletion is that the term represents the same [heparan sulfate]-glucosamine 3-sulfotransferase activity as GO:0008467.
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity" EXACT []
synonym: "glucosaminyl 3-O-sulfotransferase 2 activity" RELATED [EC:2.8.2.29]
synonym: "glucosaminyl 3-O-sulfotransferase activity" BROAD [EC:2.8.2.29]
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 2 activity" RELATED [EC:2.8.2.29]
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase activity" BROAD [EC:2.8.2.29]
synonym: "heparin-glucosamine 3-sulfotransferase 2 activity" RELATED []
synonym: "isoform/isozyme 2 (3-OST-2, HS3ST2)" RELATED [EC:2.8.2.29]
xref: EC:2.8.2.29
xref: MetaCyc:2.8.2.29-RXN
xref: RHEA:15461 {source="skos:broadMatch"}
is_a: GO:0034483 ! heparan sulfate sulfotransferase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28380" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28762" xsd:anyURI
is_obsolete: true
replaced_by: GO:0008467

[Term]
id: GO:0033872
name: heparan sulfate 3-sulfotransferase 3 activity
name: obsolete heparan sulfate 3-sulfotransferase 3 activity
namespace: molecular_function
def: "Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+." [EC:2.8.2.30]
synonym: "3'-phosphoadenylyl-sulfate:[heparan sulfate]-glucosamine 3-sulfotransferase activity" BROAD [EC:2.8.2.30]
synonym: "3-OST-3" RELATED [EC:2.8.2.30]
def: "OBSOLETE. Catalysis of the reaction: 3'-phosphoadenylyl sulfate + alpha-D-glucosaminyl-(heparan sulfate)(n) = 3-sulfo-alpha-D-glucosaminyl-(heparan sulfate)(n) + adenosine 3',5'-bisphosphate + H+." [EC:2.8.2.30]
comment: The reason for obsoletion is that the term represents the same [heparan sulfate]-glucosamine 3-sulfotransferase activity as GO:0008467.
synonym: "[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity" EXACT []
synonym: "glucosaminyl 3-O-sulfotransferase 3 activity" RELATED [EC:2.8.2.30]
synonym: "glucosaminyl 3-O-sulfotransferase 3a, 3b activity" RELATED [EC:2.8.2.30]
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3 activity" RELATED [EC:2.8.2.30]
synonym: "heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A activity" RELATED [EC:2.8.2.30]
synonym: "heparin-glucosamine 3-sulfotransferase 3 activity" RELATED []
synonym: "isoform/isozyme 3a and 3b (3-OST-3A, 3-OST-3B, HS3ST3A, HS3ST3B)" RELATED [EC:2.8.2.30]
xref: EC:2.8.2.30
xref: MetaCyc:2.8.2.30-RXN
xref: RHEA:15461 {source="skos:broadMatch"}
is_a: GO:0034483 ! heparan sulfate sulfotransferase activity
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28380" xsd:anyURI
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28762" xsd:anyURI
is_obsolete: true
replaced_by: GO:0008467

[Term]
id: GO:0033873
Expand Down
68 changes: 3 additions & 65 deletions src/ontology/imports/go-catalytic-activities-participants.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -84877,75 +84877,13 @@

<!-- http://purl.obolibrary.org/obo/GO_0033871 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033871">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_15378"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58339"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58343"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58388"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_70975"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033871"/>



<!-- http://purl.obolibrary.org/obo/GO_0033872 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033872">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_15378"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58339"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58343"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_58388"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_70975"/>
</owl:Restriction>
</rdfs:subClassOf>
</owl:Class>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0033872"/>



Expand Down Expand Up @@ -184596,5 +184534,5 @@



<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.25.2023-02-15T19:15:49Z) https://github.com/owlcs/owlapi -->

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