Obsoleted 2 MFs; fixes #28816.

[raymond91125]

No description provided.

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-12-11/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity http://purl.obolibrary.org/obo/GO_0080076

Removed

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity definition "Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule."

  • database_cross_reference "PMID:19077165"

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity label "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity"

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity SubClassOf O-methyltransferase activity

Added

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity term replaced by "GO:0042409"

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28816"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity deprecated true

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity comment "The reason for obsoletion is that this molecular function is equivalent to affeoyl-CoA O-methyltransferase activity."

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity definition "OBSOLETE. Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a caffeoyl CoA molecule."

  • database_cross_reference "PMID:19077165"

• caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity label "obsolete caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity"

caffeoyl-CoA O-methyltransferase activity http://purl.obolibrary.org/obo/GO_0042409

Added

• caffeoyl-CoA O-methyltransferase activity has_exact_synonym "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity"

obsolete phosphatidylserine-specific phospholipase A1 activity http://purl.obolibrary.org/obo/GO_0017063

Removed

• obsolete phosphatidylserine-specific phospholipase A1 activity consider "GO:0052739"

Added

• obsolete phosphatidylserine-specific phospholipase A1 activity consider "GO:0008970"

phosphatidylserine 1-acylhydrolase activity http://purl.obolibrary.org/obo/GO_0052739

Removed

• phosphatidylserine 1-acylhydrolase activity has_broad_synonym "phosphatidylserine-specific phospholipase A1 activity"

  • database_cross_reference "EC:3.1.1.32"

• phosphatidylserine 1-acylhydrolase activity label "phosphatidylserine 1-acylhydrolase activity"

• phosphatidylserine 1-acylhydrolase activity database_cross_reference "EC:3.1.1.32"

  • source "skos:broadMatch"

• phosphatidylserine 1-acylhydrolase activity definition "Catalysis of the reaction: phosphatidylserine + H2O = 2-acyl-sn-glycero-3-phosphoserine + fatty acid."

  • database_cross_reference "KEGG_REACTION:R04034"

• phosphatidylserine 1-acylhydrolase activity SubClassOf phospholipase activity

Added

• phosphatidylserine 1-acylhydrolase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28816"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• phosphatidylserine 1-acylhydrolase activity deprecated true

• phosphatidylserine 1-acylhydrolase activity label "obsolete phosphatidylserine 1-acylhydrolase activity"

• phosphatidylserine 1-acylhydrolase activity term replaced by "GO:0008970"

• phosphatidylserine 1-acylhydrolase activity comment "The reason for obsoletion is that this molecular function is equivalent to phospholipase A1 activity."

• phosphatidylserine 1-acylhydrolase activity definition "OBSOLETE. Catalysis of the reaction: phosphatidylserine + H2O = 2-acyl-sn-glycero-3-phosphoserine + fatty acid."

  • database_cross_reference "KEGG_REACTION:R04034"

phospholipase A1 activity http://purl.obolibrary.org/obo/GO_0008970

Added

• phospholipase A1 activity has_narrow_synonym "phosphatidylserine 1-acylhydrolase activity"