Skip to content

Commit

Permalink
Merge pull request #42 from hgb-bin-proteomics/develop
Browse files Browse the repository at this point in the history
update readme
  • Loading branch information
michabirklbauer authored Jul 30, 2024
2 parents 23edee5 + ce2060e commit 0db0fab
Showing 1 changed file with 10 additions and 0 deletions.
10 changes: 10 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -171,6 +171,16 @@ an [MS Amanda](https://ms.imp.ac.at/?goto=msamanda) search validated with [Perco
high-confidence PSM we checked if the identified peptide/peptidoform was among the top 50/100/500/1000 hits of *CandidateSearch*. We reach
almost 100% coverage within the first 1000 hits of *CandidateSearch* (for reference: the whole database contained ~4 200 000 peptides or ~10 500 000 peptidoforms).

## Benchmarks

Benchmarks of the different algorithms can be found in [benchmarks.md](benchmarks.md).

![benchmark_hpc_1A](benchmarks/vis_A/1A.svg)

**Figure 2:** Int32-based sparse matrix * dense matrix search using
[Eigen](https://eigen.tuxfamily.org/) generally yields the fastest computation
time on modern CPUs.

## Known Issues

[List of known issues](https://github.com/hgb-bin-proteomics/CandidateSearch/issues)
Expand Down

0 comments on commit 0db0fab

Please sign in to comment.