Segway bigWig testcase #255
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| name: Build and Test | |
| # Workflow is triggered only on push to the master branch or a pull request to | |
| # the master branch | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build-and-test: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: hoffmanlab/segway-test:latest | |
| env: | |
| SEGWAY_TEST_PYTHON_VERSION: 3 | |
| steps: | |
| # Github actions runners do not have the same user permissions as jobs running in a container | |
| # Git will ignore .git directories with different permissions: | |
| # "fatal: detected dubious ownership in repository at '/github/workspace'" | |
| # This is the current issue: https://github.com/actions/runner/issues/2033 | |
| # Can set 'options: --user 1001' on the container to match the UID of the Github runner, ref: | |
| # https://github.com/actions/runner/blob/8415f13babf8199551f817eb16b718dcdd5b31e2/images/Dockerfile#L38 | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| # Fix ownership of the checkout dir | |
| - name: Set ownership | |
| run: | | |
| chown -R $(id -u):$(id -g) $PWD | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install test dependencies | |
| run: | | |
| python3 -m pip install --upgrade pip setuptools build flake8 flake8-import-order flake8-quotes | |
| - name: Build repository | |
| run: | | |
| python3 -m build | |
| - name: Install | |
| run: | | |
| python3 -m pip install . | |
| - name: Run tests | |
| run: | | |
| gmtkPrint -version | |
| cd test && ./test_all.sh | |
| - name: Capture test results on failure | |
| if: ${{ failure () }} | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: test-results | |
| path: | | |
| test/**/*-changes.tar.gz | |
| - name: Upload build artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: segway-build | |
| path: dist/* |