GUI style color scheme

.github/workflows/pypi_release.yml

@@ -0,0 +1,39 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+permissions:
+  contents: read
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build package
+      run: python -m build
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@7eb3b701d11256e583f5b49899c5e7203deab573
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}

README.md

@@ -1,7 +1,4 @@
-# iBridges
-
-[![Python package](https://github.com/chStaiger/iBridges-Gui/actions/workflows/linter.yml/badge.svg)](https://github.com/chStaiger/iBridges-Gui/actions/workflows/linter.yml)
-[![Quarto Publish](https://github.com/chStaiger/iBridges-Gui/actions/workflows/publish.yml/badge.svg)](https://github.com/chStaiger/iBridges-Gui/actions/workflows/publish.yml)
+# iBridges <img src="ibridgesgui/icons/logo.png" width="150" align="right">  
 
 <p align="center">
   <p align="center">
@@ -11,6 +8,9 @@
   </p>
 </p>
 
+[![Python package](https://github.com/chStaiger/iBridges-Gui/actions/workflows/linter.yml/badge.svg)](https://github.com/chStaiger/iBridges-Gui/actions/workflows/linter.yml)
+[![Quarto Publish](https://github.com/chStaiger/iBridges-Gui/actions/workflows/publish.yml/badge.svg)](https://github.com/chStaiger/iBridges-Gui/actions/workflows/publish.yml)
+
 ## About
 
 The git repository contains a generic *iRODS* graphical user interface.  The iRODS functionality is based on [ibridges](https://github.com/UtrechtUniversity/iBridges) and works with any *iRODS* instance.  
@@ -33,8 +33,7 @@ The git repository contains a generic *iRODS* graphical user interface.  The iRO
 - As python package
 
   ```bash
-  pip install ibridges
-  pip install git+https://github.com/chStaiger/iBridges-Gui.git@main
+  pip install ibridgesgui
   ```
 - Locally from code (for developers)
 

docs/getting-started.qmd

@@ -20,15 +20,15 @@ When you start iBridges you will find in the upper drop-down menu `Connect` and
 
 Before we start iBridges for the first time let us check and create a valid configuration file; Click on `Configure -> Add Configuration`.
 
-![](screenshots/add_check_config.png){width=50% fig-align="center"}
+![](screenshots/add_check_config.png){width=75% fig-align="center"}
 
 If you already stored an `irods_environment.json` in the directory `~/.irods` (Windows `C:\Users\<username>\.irods`) then you can use the drop-down menu (little downward arrow) to load the configuration.
 
 If you do not have an iRODS configuration yet, click on the button `New Config`.
 
 You should see now something like:
 
-![](screenshots/add_new_config.png){width=50% fig-align="center"}
+![](screenshots/add_new_config.png){width=75% fig-align="center"}
 
 Click the `Check` button to find out whether you can make a connection to the iRODS server. If you get error messages, adjust the contents accordingly. If you are unsure, please contact your iRODS service provider.
 
@@ -38,7 +38,7 @@ Once the check runs through fine click the `Save` or `Save as` button. This will
 
 To start working with data in iRODS select `Connect -> Connect to iRODS`. This will open the pop-up window
 
-![](screenshots/login.png){width=50% fig-align="center"}
+![](screenshots/login.png){width=75% fig-align="center"}
 
 Select the file we edited above from the drop-down menu and provide your password. If you already logged into iRODS with this or another iRODS client your password might still be cached. This is indicated by the `******`. Hit `<Enter>` or press the `Connect` button.
 

docs/userdoc.qmd

@@ -110,7 +110,7 @@ In the case you want to download a large collection from iRODS, create the desti
 
   **Note that the wild card is `%`**!
 
-  In the example search we are looking for data in a collection called *my_books* which can be located anywhere in the iRODS tree. This is denoted by `%/` and we specify that we want to retrieve data which carries the metadata key *author* where the value ends with *Carroll*.
+  In the example search we are looking for data in a collection called *my_books* which can be located anywhere in the iRODS tree. This is denoted by `%` and we specify that we want to retrieve data which carries the metadata key *author* where the value ends with *Carroll*.
 
   *Single click* on items in the list and click the `Download` button to open a dialog to select the destination for the data and start the download
 

ibridgesgui/__main__.py

@@ -5,6 +5,7 @@
 import sys
 from pathlib import Path
 
+import PyQt6.QtGui
 import PyQt6.QtWidgets
 import PyQt6.uic
 import setproctitle
@@ -18,6 +19,7 @@
 from ibridgesgui.search import Search
 from ibridgesgui.sync import Sync
 from ibridgesgui.ui_files.MainMenu import Ui_MainWindow
+from ibridgesgui.welcome import Welcome
 
 # Global constants
 THIS_APPLICATION = "ibridges-gui"
@@ -38,18 +40,15 @@ def __init__(self, app_name):
             PyQt6.uic.loadUi(UI_FILE_DIR / "MainMenu.ui", self)
 
         self.logger = logging.getLogger(app_name)
+
         self.irods_path = Path("~", ".irods").expanduser()
         self.app_name = app_name
+        self.welcome_tab()
         self.ui_tabs_lookup = {
             "tabBrowser": self.init_browser_tab,
             "tabSync": self.init_sync_tab,
             "tabSearch": self.init_search_tab,
-            #'tabDataBundle': self.setupTabDataBundle,
-            #'tabCreateTicket': self.setupTabCreateTicket,
-            #'tabELNData': self.setupTabELNData,
-            #'tabAmberWorkflow': self.setupTabAmberWorkflow,
             "tabInfo": self.init_info_tab,
-            #'tabExample': self.setupTabExample,
         }
 
         self.session = None
@@ -71,6 +70,7 @@ def disconnect(self):
             self.session = None
             self.session_dict.clear()
         self.tab_widget.clear()
+        self.welcome_tab()
 
     def connect(self):
         """Create iRODS session."""
@@ -112,6 +112,11 @@ def setup_tabs(self):
             tab_fun()
             # self.ui_tabs_lookup[tab_name]()
 
+    def welcome_tab(self):
+        """Create first tab."""
+        welcome = Welcome()
+        self.tab_widget.addTab(welcome, "iBridges")
+
     def init_info_tab(self):
         """Create info."""
         irods_info = Info(self.session)

ibridgesgui/browser.py

@@ -231,7 +231,6 @@ def load_browser_table(self):
                     len(coll.data_objects) + len(coll.subcollections),
                     coll_data + obj_data,
                 )
-                self.browser_table.resizeColumnsToContents()
             except Exception:
                 self.browser_table.setRowCount(0)
                 self.logger.exception("Cannot load browser.")
@@ -523,6 +522,8 @@ def _fill_preview_tab(self, irods_path):
                     ]
             else:
                 content = [f"No Preview for: {irods_path}"]
+        else:
+            content = [f"No Preview for: {irods_path}"]
         populate_textfield(self.preview_browser, content)
 
     def _get_item_path(self, row):

ibridgesgui/gui_utils.py

@@ -16,12 +16,14 @@
 
 
 UI_FILE_DIR = files(__package__) / "ui_files"
-
+LOGO_DIR = files(__package__) / "icons"
 
 # Widget utils
 def populate_table(table_widget, rows: int, data_by_row: list):
     """Populate a table-like pyqt widget with data."""
+    table_widget.setRowCount(0)
     table_widget.setRowCount(rows)
+
     for row, data in enumerate(data_by_row):
         for col, item in enumerate(data):
             table_widget.setItem(row, col, PyQt6.QtWidgets.QTableWidgetItem(str(item)))

ibridgesgui/popup_widgets.py

@@ -79,6 +79,8 @@ def accept(self):
             try:
                 os.makedirs(new_dir_path)
                 self.done(1)
+            except FileExistsError:
+                self.error_label.setText("ERROR: Folder already exists.")
             except Exception as error:
                 if hasattr(error, "message"):
                     self.error_label.setText(error.message)

ibridgesgui/sync.py

@@ -276,8 +276,10 @@ def _sync_diff_end(self, thread_output: dict):
             return
 
         self.error_label.clear()
-        table_data = thread_output["result"]["upload"] + thread_output["result"]["download"]
-
+        table_data = [(ipath, lpath, ipath.size)
+                      for ipath, lpath in thread_output["result"]["download"]] + \
+                     [(lpath, ipath, lpath.stat().st_size)
+                      for lpath, ipath in thread_output["result"]["upload"]]
         populate_table(self.diff_table, len(table_data), table_data)
         if len(table_data) == 0:
             self.error_label.setText("Data is already synchronised.")

ibridgesgui/threads.py

@@ -89,6 +89,7 @@ def run(self):
         transfer_out = {}
         transfer_out["error"] = ""
 
+        emit_string = "Create collections."
         for coll in self.diffs["create_collection"]:
             try:
                 IrodsPath.create_collection(self.thread_session, coll)
@@ -101,6 +102,7 @@ def run(self):
                     transfer_out["error"] + f"\nTransfer failed Cannot create {coll}: {repr(error)}"
                 )
 
+        emit_string = "Create folders."
         for folder in self.diffs["create_dir"]:
             print(f"create {folder}")
             try:

ibridgesgui/ui_files/MainMenu.py

@@ -1,6 +1,6 @@
 # Form implementation generated from reading ui file 'ibridgesgui/ui_files/MainMenu.ui'
 #
-# Created by: PyQt6 UI code generator 6.4.2
+# Created by: PyQt6 UI code generator 6.6.1
 #
 # WARNING: Any manual changes made to this file will be lost when pyuic6 is
 # run again.  Do not edit this file unless you know what you are doing.
@@ -16,22 +16,29 @@ def setupUi(self, MainWindow):
         MainWindow.setMinimumSize(QtCore.QSize(1300, 850))
         MainWindow.setStyleSheet("QWidget\n"
 "{\n"
-"    color: rgb(86, 184, 139);\n"
-"    background-color: rgb(54, 54, 54);\n"
-"    selection-background-color: rgb(58, 152, 112);\n"
-"    font: 16pt;\n"
+"    background-color: rgb(211,211,211);\n"
+"    color: rgb(88, 88, 90);\n"
+"    selection-background-color: rgb(21, 165, 137);\n"
+"    selection-color: rgb(245, 244, 244);\n"
+"    \n"
+"    font: 16pt\n"
 "}\n"
 "\n"
-"QTabBar::tab:top:selected {\n"
-"    background-color: rgb(58, 152, 112);\n"
-"    color: rgb(54, 54, 54);\n"
+"QLabel\n"
+"{\n"
+"  background-color: rgb(211,211,211);\n"
 "}\n"
 "\n"
 "QLabel#error_label\n"
 "{\n"
-"    color: rgb(217, 174, 23);\n"
-"     font: 18pt;\n"
+"   color: rgb(220, 130, 30);\n"
+"}\n"
+"\n"
+"QTabBar::tab:top:selected {\n"
+"    background-color: rgb(21, 165, 137);\n"
+"    color: rgb(88, 88, 90);\n"
 "}\n"
+"\n"
 "")
         self.centralwidget = QtWidgets.QWidget(parent=MainWindow)
         self.centralwidget.setStyleSheet("")
@@ -44,7 +51,6 @@ def setupUi(self, MainWindow):
         font.setPointSize(16)
         font.setBold(False)
         font.setItalic(False)
-        font.setWeight(50)
         self.tab_widget.setFont(font)
         self.tab_widget.setObjectName("tab_widget")
         self.verticalLayout.addWidget(self.tab_widget)
@@ -59,15 +65,13 @@ def setupUi(self, MainWindow):
         font.setPointSize(16)
         font.setBold(False)
         font.setItalic(False)
-        font.setWeight(50)
         self.menubar.setFont(font)
         self.menubar.setObjectName("menubar")
         self.main_menu = QtWidgets.QMenu(parent=self.menubar)
         font = QtGui.QFont()
         font.setPointSize(16)
         font.setBold(False)
         font.setItalic(False)
-        font.setWeight(50)
         self.main_menu.setFont(font)
         self.main_menu.setObjectName("main_menu")
         self.config_menu = QtWidgets.QMenu(parent=self.menubar)

ibridgesgui/ui_files/MainMenu.ui

@@ -19,27 +19,44 @@
   <property name="windowTitle">
    <string>MainWindow</string>
   </property>
+  <property name="windowIcon">
+   <iconset>
+    <normaloff>../icons/logo.png</normaloff>../icons/logo.png</iconset>
+  </property>
   <property name="styleSheet">
    <string notr="true">QWidget
 {
-	color: rgb(86, 184, 139);
-	background-color: rgb(54, 54, 54);
-	selection-background-color: rgb(58, 152, 112);
-    font: 16pt;
+    background-color: rgb(211,211,211);
+    color: rgb(88, 88, 90);
+    selection-background-color: rgb(21, 165, 137);
+    selection-color: rgb(245, 244, 244);
+
+	font: 16pt
 }
 
-QTabBar::tab:top:selected {
-    background-color: rgb(58, 152, 112);
-    color: rgb(54, 54, 54);
+QLabel
+{
+  background-color: rgb(211,211,211);
 }
 
 QLabel#error_label
 {
-	color: rgb(217, 174, 23);
-     font: 18pt;
+   color: rgb(220, 130, 30);
+}
+
+QTabBar::tab:top:selected {
+    background-color: rgb(21, 165, 137);
+    color: rgb(88, 88, 90);
 }
+
 </string>
   </property>
+  <property name="iconSize">
+   <size>
+    <width>400</width>
+    <height>400</height>
+   </size>
+  </property>
   <widget class="QWidget" name="centralwidget">
    <property name="styleSheet">
     <string notr="true"/>
@@ -56,14 +73,16 @@ QLabel#error_label
       <property name="font">
        <font>
         <pointsize>16</pointsize>
-        <weight>50</weight>
         <italic>false</italic>
         <bold>false</bold>
        </font>
       </property>
       <property name="currentIndex">
        <number>-1</number>
       </property>
+      <property name="usesScrollButtons">
+       <bool>true</bool>
+      </property>
      </widget>
     </item>
     <item>
@@ -87,7 +106,6 @@ QLabel#error_label
    <property name="font">
     <font>
      <pointsize>16</pointsize>
-     <weight>50</weight>
      <italic>false</italic>
      <bold>false</bold>
     </font>
@@ -96,7 +114,6 @@ QLabel#error_label
     <property name="font">
      <font>
       <pointsize>16</pointsize>
-      <weight>50</weight>
       <italic>false</italic>
       <bold>false</bold>
      </font>