Split assembly at BED coordinates #142
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That's cool! I had to reinvent that wheel too, wish I stumbled upon that PR earlier |
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I manually found and wanted to address some misjoins in an assembly I'm working on.
I used splitasm (branched from #135) as a framework, and modified it to accept a BED file specifying regions to be split. I then implemented this as a new utility
manualsplits.I mostly wrote this for myself so I could use an AGP to update the GFF instead of risking errors doing it by hand, but I thought others might find the utility useful.