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Split assembly at BED coordinates #142

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Split assembly at BED coordinates #142

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Commits on Oct 13, 2022

  1. Can update a gff from splitasm if no feats ovlp gaps

    @Neato-Nick
    Neato-Nick committed Oct 13, 2022
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  2. Skips features that span gaps in AGP

    @Neato-Nick
    Neato-Nick committed Oct 13, 2022
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Commits on Oct 14, 2022

  1. Bug fix -s not required for sup_update

    @Neato-Nick
    Neato-Nick committed Oct 14, 2022
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  2. Added option to not split assembly across GFF features

    @Neato-Nick
    Neato-Nick committed Oct 14, 2022
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Commits on Oct 25, 2022

  1. Fix: child features with parents that were skipped did not get skipped

    @Neato-Nick
    Neato-Nick committed Oct 25, 2022
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Commits on Nov 30, 2022

  1. Splits contigs before any gaps using BED file. Ensure no new gaps wil… 

    …l be created
    @Neato-Nick
    Neato-Nick committed Nov 30, 2022
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  2. Separate manual split functionality into new utility

    @Neato-Nick
    Neato-Nick committed Nov 30, 2022
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  3. Revert manual-split functionality out of splitasm

    @Neato-Nick
    Neato-Nick committed Nov 30, 2022
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  4. Less logging for quieter runs

    @Neato-Nick
    Neato-Nick committed Nov 30, 2022
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