Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
ndierckx authored Jun 3, 2020
1 parent d3b0354 commit 0903458
Showing 1 changed file with 2 additions and 7 deletions.
9 changes: 2 additions & 7 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -99,7 +99,7 @@ Project:
Project name = Test
Type = mito
Genome Range = 12000-22000
K-mer = 39
K-mer = 33
Max memory =
Extended log = 0
Save assembled reads = no
Expand All @@ -124,8 +124,6 @@ Reverse reads = /path/to/reads/reads_2.fastq
Optional:
-----------------------
Insert size auto = yes
Insert Range = 1.8
Insert Range strict = 1.3
Use Quality Scores = no
</pre>

Expand Down Expand Up @@ -178,10 +176,7 @@ Reverse reads = The path to the file that contains the reverse reads (not

Optional:
-----------------------
Insert size auto = (yes/no) This will finetune your insert size automatically (Default: yes)
Insert Range = This variation on the insert size, could lower it when the coverage is very high or raise it when the
coverage is too low (Default: 1.6).
Insert Range strict = Strict variation to resolve repetitive regions (Default: 1.2).
Insert size auto = (yes/no) This will finetune your insert size automatically (Default: yes)
Use Quality Scores = It will take in account the quality scores, only use this when reads have low quality, like with the
300 bp reads of Illumina (yes/no)
</pre>
Expand Down

0 comments on commit 0903458

Please sign in to comment.