NOVOPlasty2.6.1

• Reference option will work with more distant genomes.

NOVOPlasty2.6

• New Reference option available, only been tested on references of the same genus (UPDATED CONFIG FILE!).
• This reference option will be used to resolve duplicated regions or inverted repeats, the assembly will still be de novo
• Improved plant mitochondria option, reduced assembly of chloroplast sequences in "mito_plant" mode
• But you first have to assemble the chloroplast before the mitochondria in plants!
• "mito_plant" mode will be further improved.

NOVOPlasty2.5.9

-Improved save assembled reads option
-Seed errors related to incompatible reads ids solved (was only partially solved in previous update).

NOVOPlasty2.5.8

A new option to save the assembled reads in seperate files (UPDATED CONFIG FILE!).
Seed errors related to incompatible reads ids solved (SRA data files were often incompatible).

NOVOPlasty2.5.7

-It is now possible to use bz2 zipped read files as input.
-Long repeats (> 400 bp) won't make the assembly get stuck in a loop anymore
-Several read id's were added to the library.

NOVOPlasty2.5.6

-It is now possible to use zipped (only .gz extension) read files as input.
-An extra option is added to the config file (Max memory). This makes you able to choose a maximum memory usage.
-This max memory option is very handy if you want to subsample your dataset (leave it blank if no limit).

NOVOPlasty2.4

-SEED RETRIEVAL bug was sometimes caused by unsupported read formats. The error message is updated and then you can contact me to update the read format.
-Bug in repetitive region is resolved (assembly didn't stop and made huge extende log files).

NOVOPlasty2.2.2

-Improved assembly of duplicated and repetitive regions.
-'chloro' setting is replaced by the 'chloro2' setting (now the only options are 'chloro' and 'mito')
-New instructions

NOVOPlasty1.2.3

• Improved seed retrieval with low coverage
• Data files without quality scores can be used as input file

NOVOPlasty1.2.2

• IUPAC codes are correctly called, in stead of to many 'N's
• Bugs fixed