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mattfidler committed May 23, 2022
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3 changes: 3 additions & 0 deletions README.Rmd
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Expand Up @@ -19,6 +19,9 @@ knitr::opts_chunk$set(
[![R build
status](https://github.com/nlmixr2/nlmixr2plot/workflows/R-CMD-check/badge.svg)](https://github.com/nlmixr2/nlmixr2plot/actions)
[![CodeFactor](https://www.codefactor.io/repository/github/nlmixr2/nlmixr2plot/badge)](https://www.codefactor.io/repository/github/nlmixr2/nlmixr2plot)
[![CRAN version](http://www.r-pkg.org/badges/version/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![CRAN total downloads](https://cranlogs.r-pkg.org/badges/grand-total/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![CRAN total downloads](https://cranlogs.r-pkg.org/badges/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![codecov](https://codecov.io/gh/nlmixr2/nlmixr2plot/branch/main/graph/badge.svg)](https://app.codecov.io/gh/nlmixr2/nlmixr2plot)
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13 changes: 8 additions & 5 deletions README.md
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Expand Up @@ -12,6 +12,9 @@ output: github_document
[![R build
status](https://github.com/nlmixr2/nlmixr2plot/workflows/R-CMD-check/badge.svg)](https://github.com/nlmixr2/nlmixr2plot/actions)
[![CodeFactor](https://www.codefactor.io/repository/github/nlmixr2/nlmixr2plot/badge)](https://www.codefactor.io/repository/github/nlmixr2/nlmixr2plot)
[![CRAN version](http://www.r-pkg.org/badges/version/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![CRAN total downloads](https://cranlogs.r-pkg.org/badges/grand-total/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![CRAN total downloads](https://cranlogs.r-pkg.org/badges/nlmixr2plot)](https://cran.r-project.org/package=nlmixr2plot)
[![codecov](https://codecov.io/gh/nlmixr2/nlmixr2plot/branch/main/graph/badge.svg)](https://app.codecov.io/gh/nlmixr2/nlmixr2plot)
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Expand Down Expand Up @@ -75,7 +78,7 @@ fit <- nlmixr2(one.compartment, theo_sd, est="saem", saemControl(print=0))
#> → finding duplicate expressions in saem model...
#> → optimizing duplicate expressions in saem model...
#> ✔ done
#> rxode2 2.0.6 using 4 threads (see ?getRxThreads)
#> rxode2 2.0.7 using 4 threads (see ?getRxThreads)
#> Calculating covariance matrix
#> → loading into symengine environment...
#> → pruning branches (`if`/`else`) of saem model...
Expand All @@ -90,8 +93,8 @@ fit <- nlmixr2(one.compartment, theo_sd, est="saem", saemControl(print=0))
#> ✔ done
#> → compress origData in nlmixr2 object, save 5952
#> → compress phiM in nlmixr2 object, save 62360
#> → compress parHist in nlmixr2 object, save 9408
#> → compress saem0 in nlmixr2 object, save 22936
#> → compress parHist in nlmixr2 object, save 9560
#> → compress saem0 in nlmixr2 object, save 24680

print(fit)
#> ── nlmixr SAEM OBJF by FOCEi approximation ──
Expand All @@ -101,8 +104,8 @@ print(fit)
#>
#> ── Time (sec $time): ──
#>
#> setup covariance saem table compress other
#> elapsed 0.00189 0.021008 5.183 0.026 0.023 2.156102
#> setup covariance saem table compress other
#> elapsed 0.001688 0.009007 3.093 0.021 0.024 1.499305
#>
#> ── Population Parameters ($parFixed or $parFixedDf): ──
#>
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