Test ggplot2 outputs

.Rbuildignore

@@ -11,3 +11,4 @@
 ^docs$
 ^pkgdown$
 ^.lintr$
+^LICENSE\.md$

.github/release.yaml

@@ -0,0 +1,36 @@
+---
+name: Release 🎈
+
+on:
+  push:
+    tags:
+      - "v*"
+  workflow_dispatch:
+
+jobs:
+  build:
+    name: Build package 🎁
+    needs: release
+    uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      skip-r-cmd-check: true
+      skip-r-cmd-install: true
+  docs:
+    name: Pkgdown Docs 📚
+    needs: release
+    uses: insightsengineering/r.pkg.template/.github/workflows/pkgdown.yaml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+  validation:
+    name: R Package Validation report 📃
+    needs: release
+    uses: insightsengineering/r.pkg.template/.github/workflows/validation.yaml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+  release:
+    name: Create release 🎉
+    uses: insightsengineering/r.pkg.template/.github/workflows/release.yaml@main
+    permissions:
+      contents: write

.github/workflows/check.yaml

@@ -1,4 +1,3 @@
-
 ---
 name: Check 🛠
 
@@ -24,26 +23,19 @@ jobs:
     name: R CMD Check 🧬
     uses: insightsengineering/r.pkg.template/.github/workflows/build-check-install.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+    with:
+      unit-test-report-brand: >-
+        https://raw.githubusercontent.com/openpharma/crmPack/main/man/figures/logo.png
   coverage:
-    name: Coverage 📔 
+    name: Coverage 📔
     uses: insightsengineering/r.pkg.template/.github/workflows/test-coverage.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
   linter:
     if: github.event_name == 'pull_request'
     name: SuperLinter 🦸‍♀️
     uses: insightsengineering/r.pkg.template/.github/workflows/linter.yaml@main
-  roxygen:
-    name: Roxygen 🅾
-    uses: insightsengineering/r.pkg.template/.github/workflows/roxygen.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-    with:
-      auto-update: true
-  gitleaks:
-    name: gitleaks 💧
-    uses: insightsengineering/r.pkg.template/.github/workflows/gitleaks.yaml@main
   spelling:
     if: github.event_name == 'pull_request'
     name: Spell Check 🆎
@@ -52,6 +44,12 @@ jobs:
     if: github.event_name == 'pull_request'
     name: Check URLs 🌐
     uses: insightsengineering/r.pkg.template/.github/workflows/links.yaml@main
+  vbump:
+    name: Version Bump 🤜🤛
+    if: github.event_name == 'push'
+    uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
   version:
     name: Version Check 🏁
     uses: insightsengineering/r.pkg.template/.github/workflows/version.yaml@main
@@ -64,7 +62,9 @@ jobs:
     uses: insightsengineering/r.pkg.template/.github/workflows/style.yaml@main
     with:
       auto-update: true
-  # grammar:
-  #   if: github.event_name == 'pull_request'
-  #   name: Grammar Check 🔤
-  #   uses: insightsengineering/r.pkg.template/.github/workflows/grammar.yaml@main
+    secrets:
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}
+  grammar:
+    if: github.event_name == 'pull_request'
+    name: Grammar Check 🔤
+    uses: insightsengineering/r.pkg.template/.github/workflows/grammar.yaml@main

.github/workflows/docs.yaml

@@ -38,4 +38,4 @@ jobs:
     name: Pkgdown Docs 📚
     uses: insightsengineering/r.pkg.template/.github/workflows/pkgdown.yaml@main
     secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      REPO_GITHUB_TOKEN: ${{ secrets.REPO_GITHUB_TOKEN }}

.github/workflows/rhub.yaml

@@ -0,0 +1,95 @@
+# R-hub's generic GitHub Actions workflow file. It's canonical location is at
+# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml
+# You can update this file to a newer version using the rhub2 package:
+#
+# rhub::rhub_setup()
+#
+# It is unlikely that you need to modify this file manually.
+
+name: R-hub
+run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}"
+
+on:
+  workflow_dispatch:
+    inputs:
+      config:
+        description: 'A comma separated list of R-hub platforms to use.'
+        type: string
+        default: 'linux,windows,macos'
+      name:
+        description: 'Run name. You can leave this empty now.'
+        type: string
+      id:
+        description: 'Unique ID. You can leave this empty now.'
+        type: string
+
+jobs:
+
+  setup:
+    runs-on: ubuntu-latest
+    outputs:
+      containers: ${{ steps.rhub-setup.outputs.containers }}
+      platforms: ${{ steps.rhub-setup.outputs.platforms }}
+
+    steps:
+    # NO NEED TO CHECKOUT HERE
+    - uses: r-hub/actions/setup@v1
+      with:
+        config: ${{ github.event.inputs.config }}
+      id: rhub-setup
+
+  linux-containers:
+    needs: setup
+    if: ${{ needs.setup.outputs.containers != '[]' }}
+    runs-on: ubuntu-latest
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.containers) }}
+    container:
+      image: ${{ matrix.config.container }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+
+  other-platforms:
+    needs: setup
+    if: ${{ needs.setup.outputs.platforms != '[]' }}
+    runs-on: ${{ matrix.config.os }}
+    name: ${{ matrix.config.label }}
+    strategy:
+      fail-fast: false
+      matrix:
+        config: ${{ fromJson(needs.setup.outputs.platforms) }}
+
+    steps:
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/setup-r@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/run-check@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: rbqmR
 Title: Risk-Based Quality Management in R
-Version: 0.0.0.9001
+Version: 0.0.0.9002
 Authors@R: person(
              given = "John",
              family = "Kirkpatrick",
@@ -15,7 +15,7 @@ Language: en-GB
 License: MIT + file LICENSE
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.2
 Suggests: 
     knitr,
     readxl,
@@ -27,7 +27,6 @@ Imports:
     dplyr,
     futile.logger,
     ggplot2,
-    lifecycle,
     magrittr,
     rlang,
     runjags,
@@ -38,4 +37,3 @@ Imports:
 Depends: 
     R (>= 2.10)
 LazyData: true
-VignetteBuilder: knitr