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    31 repositories

    • fitPoly

      Public
      Development repository of the R package fitPoly.
      R
      •1•1•0•0•Updated Aug 15, 2024Aug 15, 2024

    • FAIR_CxE

      Public
      Supporting information for the Manuscript: TITLE
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 5, 2023May 5, 2023

    • coreCollection

      Public
      coreCollection
      R
      •0•0•0•0•Updated Dec 20, 2022Dec 20, 2022

    • QTM

      Public
      QTLTableMiner++ tool for mining tables in scientific articles
      text-miningcandidate-genessolrontologiesqtlscientific-articleseurope-pmc
      Java
      •
      Apache License 2.0
      •6•4•2•3•Updated May 20, 2022May 20, 2022

    • CoSSA

      Public
      Comparative Subsequence Sets Analysis (CoSSA) workflows to identify haplotype specific SNPs linked to a trait of interest from Whole Genome Sequencing data
      Shell
      •2•0•0•0•Updated Jan 13, 2022Jan 13, 2022

    • elixir-fondue-datathon

      Public
      ELIXIR FONDUE Datathon
      Jupyter Notebook
      •0•2•1•0•Updated Oct 1, 2021Oct 1, 2021

    • pedigreeSim

      Public
      PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom…
      Java
      •2•13•2•0•Updated Apr 13, 2021Apr 13, 2021

    • Pedimap

      Public
      Pedimap: software for the visualization of genetic and phenotypic data in pedigrees
      C++
      •1•4•0•0•Updated Feb 4, 2021Feb 4, 2021

    • PediHaplotyper

      Public
      PediHaplotyper: software for consistent assignment of marker haplotypes in pedigrees
      R
      •1•2•0•0•Updated Feb 2, 2021Feb 2, 2021

    • WatsonPotato

      Public
      Additional material for the article: Extracting knowledge networks from plant scientific literature: Potato tuber flesh color as an exemplary trait.
      knowledge-networks
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 16, 2020Sep 16, 2020

    • Extracting_knowledge_networks_from_literature-Scripts_for_Watson_potato

      Public
      Scripts used for the work described in the manuscript
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2019Nov 20, 2019

    • QTL-prioritisation

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jun 28, 2019Jun 28, 2019

    • DeltaSNP

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2018Sep 17, 2018

    • MQ2_Web

      Public
      A simple web interface for MQ2 to process output from MapQTL analysis.
      Python
      •1•2•0•1•Updated Aug 10, 2018Aug 10, 2018

    • linked-data-demo

      Public
      JavaScript
      •
      MIT License
      •5•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • linked-data-demo_redirect

      Public
      The redirection layer for the linked-data-demo project for plants.
      Python
      •0•0•0•0•Updated Nov 21, 2017Nov 21, 2017

    • flowerpowerparrot

      Public
      script to download data of parrot flower power sensors using 'powerpot' API
      Python
      •0•0•1•0•Updated Mar 1, 2017Mar 1, 2017

    • GenesysParser

      Public
      Client to read and parse accession (MCPD passport) information from GENESYS.
      genetic-diversity
      Python
      •0•0•0•0•Updated Nov 18, 2016Nov 18, 2016

    • ODEX-FAIRDataPoint

      Public
      Java
      •
      Apache License 2.0
      •14•0•0•0•Updated Jun 8, 2016Jun 8, 2016

    • jChebi2gene

      Public
      Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
      Java
      •0•3•0•0•Updated Nov 14, 2015Nov 14, 2015

    • scripts

      Public
      Random collection of scripts
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 19, 2015Oct 19, 2015

    • Marker2Sequence

      Public
      Explore QTL regions for candidate genes.
      JavaScript
      •2•2•0•0•Updated May 29, 2014May 29, 2014

    • SemGem

      Public
      Semantic genebank integration
      CSS
      •0•0•2•0•Updated May 29, 2014May 29, 2014

    • MQ2

      Public
      A simple python module to process output from MapQTL analysis.
      Python
      •
      GNU General Public License v3.0
      •3•2•0•0•Updated Jul 1, 2013Jul 1, 2013

    • gff2RDF

      Public
      Convert the genome annotation of some crops into RDF
      Java
      •
      Other
      •0•2•0•0•Updated Jun 27, 2013Jun 27, 2013

    • BreeDB-Lite

      Public
      BreeDB is a relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, which offers tools to present basic statistical overviews such as box plots , histograms, but also multivariate tools. Graphical genotyping tools are available to show molecular marker da…
      Other
      •1•2•0•0•Updated Feb 20, 2013Feb 20, 2013

    • path2gene

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Nov 15, 2012Nov 15, 2012

    • chebi2gene

      Public
      Python
      •
      Other
      •0•3•0•0•Updated Jul 16, 2012Jul 16, 2012

    • pbr.github.com

      Public
      Description Wageningen UR Plant Breeding github repository
      0•2•0•0•Updated Jun 13, 2012Jun 13, 2012

    • MySQLdbCompare

      Public
      Compare copies of MySQL db schemas
      0•3•0•0•Updated Mar 12, 2012Mar 12, 2012