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    20 repositories

    • TKG-DTI

      Public
      Prediction of drug-target interactions using a knowledge graph that includes the cancer targetome resource
      Jupyter Notebook
      •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

    • nvflare-cancer

      Public
      Using nvflare federated learning in a cancer research project
      Shell
      •
      Apache License 2.0
      •1•2•0•0•Updated Nov 1, 2024Nov 1, 2024

    • MMDL_FL

      Public
      Updating and refactoring to support a federated learning scenario
      1•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • beataml2.0_data

      Public
      Data accompanying the BeatAML2.0 manuscript
      Creative Commons Attribution 4.0 International
      •2•5•0•0•Updated Feb 13, 2024Feb 13, 2024

    • SIG

      Public
      Workflows and code for the Systems Immunogenetics project
      Jupyter Notebook
      •3•1•0•0•Updated Nov 10, 2023Nov 10, 2023

    • bias_fairness_in_ml

      Public
      Applied Labs for 'Achieving Fairness in ML/AI'
      HTML
      •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

    • beataml2_manuscript

      Public
      Workflow to reproduce results and figures for the second BeatAML manuscript
      R
      •3•10•0•0•Updated Jun 28, 2022Jun 28, 2022

    • cycIF-workflow

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

    • HNSCC_Notebook

      Public
      Workflow of light/dark pathways in HNSCC
      HTML
      •1•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • packageDir

      Public
      pathway analysis package for HNSCC paper
      R
      •0•1•0•0•Updated Sep 9, 2019Sep 9, 2019

    • immpload

      Public
      Immport upload preparation
      immport
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Sep 4, 2019Sep 4, 2019

    • beataml_genomics

      Public
      Public version of BeatAML workflow
      Scala
      •0•0•0•0•Updated Jul 2, 2019Jul 2, 2019

    • openCyto

      Public
      A package that provides data analysis pipeline for flow cytometry.
      R
      •29•0•0•0•Updated Nov 8, 2017Nov 8, 2017

    • batchtools

      Public
      Tools for computation on batch systems
      R
      •
      GNU Lesser General Public License v3.0
      •51•0•0•0•Updated May 5, 2017May 5, 2017

    • BatchJobs

      Public
      BatchJobs: Batch computing with R
      R
      •
      Other
      •20•0•0•0•Updated Oct 10, 2016Oct 10, 2016

    • HitWalker2

      Public
      HTML
      •3•5•0•0•Updated Jan 4, 2016Jan 4, 2016

    • vcf2maf

      Public
      Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
      Perl
      •
      Apache License 2.0
      •218•0•0•0•Updated Jul 13, 2015Jul 13, 2015

    • gatk-protected

      Public
      GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
      Java
      •126•0•0•0•Updated May 18, 2015May 18, 2015

    • HTCondor_drivers

      Public
      Scala
      •0•0•0•0•Updated May 15, 2015May 15, 2015

    • pathLayerDistributionVersion2

      Public
      Experimental version, ie: not guaranteed to function correctly!
      R
      •1•0•0•0•Updated Feb 17, 2015Feb 17, 2015