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    31 repositories

    • status

      Public
      📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime
      uptime-monitorstatus-pageupptime
      Markdown
      •
      MIT License
      •0•0•1•0•Updated Nov 20, 2024Nov 20, 2024

    • status-genomics4rd

      Public
      📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime
      uptime-monitorstatus-pageupptimegenomics4rd
      Markdown
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • osmp

      Public
      One-Sided Matching Portal
      TypeScript
      •1•6•3•11•Updated Nov 19, 2024Nov 19, 2024

    • seqr-cfi

      Public
      web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CFI on G4RD
      Python
      •
      GNU Affero General Public License v3.0
      •89•0•2•6•Updated Nov 18, 2024Nov 18, 2024

    • crg2-pacbio

      Public
      Python
      •0•0•8•1•Updated Nov 13, 2024Nov 13, 2024

    • crg2

      Public
      Research pipeline for exploring clinically relevant genomic variants
      Python
      •
      Apache License 2.0
      •5•17•38•7•Updated Nov 11, 2024Nov 11, 2024

    • seqr

      Public
      web-based analysis tool for rare disease genomics. Forked from Broad Institute, hosted for CCM
      Perl
      •
      GNU Affero General Public License v3.0
      •89•0•1•0•Updated Oct 15, 2024Oct 15, 2024

    • cre

      Public
      excel report generation using data from bcbio variant2 germline pipeline
      Shell
      •
      MIT License
      •0•4•0•7•Updated Sep 17, 2024Sep 17, 2024

    • drug-molecules-reps

      Public
      Testing out models to find better representation of drug-like molecules
      Jupyter Notebook
      •0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • drug-screen-models

      Public
      Runs for trying all diffusion and docking models
      0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • FORCAST

      Public
      Finding, Optimizing, and Reporting Cas Targets: a fully-integrated and open-source pipeline to design CRISPR mutagenesis experiments.
      bioinformaticsgenomicscrispr
      Python
      •1•4•0•0•Updated Apr 19, 2024Apr 19, 2024

    • crg

      Public
      clinical reseach genome scripts
      Python
      •
      MIT License
      •0•0•0•2•Updated Dec 19, 2023Dec 19, 2023

    • seqr-loading-pipelines

      Public
      hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
      Python
      •
      MIT License
      •20•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • MetaFusion-Clinical

      Public
      Perl
      •
      BSD 3-Clause Clear License
      •1•1•2•0•Updated Oct 16, 2023Oct 16, 2023

    • MetaFusion

      Public
      bioinformaticsrna-seqgenomicsbiology
      Python
      •
      GNU Lesser General Public License v3.0
      •2•8•4•0•Updated Oct 3, 2023Oct 3, 2023

    • gene_fusion

      Public
      Gene fusion pipeline
      Python
      •1•0•0•0•Updated Jun 30, 2023Jun 30, 2023

    • osmp-cmh-token-proxy

      Public
      A NodeJS proxy for swapping Authorization headers in OSMP requests to CMH's PhenoTips instance.
      TypeScript
      •0•2•1•0•Updated May 1, 2023May 1, 2023

    • stager

      Public
      Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.
      care4raregenomics4rd
      TypeScript
      •0•7•13•22•Updated Mar 2, 2023Mar 2, 2023

    • osmp-annotation

      Public
      Job script to run annotation on variants pulled back from the One-sided Matching Portal
      Nextflow
      •0•0•0•0•Updated Aug 26, 2022Aug 26, 2022

    • report-scripts

      Public
      Scripts to transform and POST pipeline reports
      Python
      •0•1•1•0•Updated May 30, 2022May 30, 2022

    • slurm-rest-ts

      Public
      OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.
      javascripttypescripthpcclusterslurmopenapi
      TypeScript
      •0•0•0•0•Updated Mar 24, 2022Mar 24, 2022

    • slurm-rest-py

      Public
      OpenAPI client package for the Slurm REST API, automatically generated by OpenAPI-generator.
      hpcclusterslurmpython3pythonopenapi
      Python
      •1•1•0•0•Updated Dec 20, 2021Dec 20, 2021

    • .github

      Public
      0•0•0•0•Updated Oct 18, 2021Oct 18, 2021

    • jst

      Public archive
      Job Submitter & Tracker. An internet-facing API that can handle job submissions and pass that along to various schedulers
      Python
      •0•0•0•0•Updated Oct 15, 2021Oct 15, 2021

    • hcc-calculator

      Public
      JavaScript
      •0•0•1•0•Updated May 18, 2021May 18, 2021

    • dcc-file-transfer

      Public archive
      Server and client for transferring large files to the CCM's Data Coordination Centre (DCC)
      JavaScript
      •
      MIT License
      •2•4•9•2•Updated Mar 18, 2021Mar 18, 2021

    • sample-tracker

      Public archive
      CSS
      •0•0•0•4•Updated Dec 12, 2020Dec 12, 2020

    • mugqic_pipelines

      Public
      Python
      •
      GNU Lesser General Public License v3.0
      •3•5•1•1•Updated Oct 9, 2018Oct 9, 2018

    • dti-processing

      Public
      Steps and scripts involved with processing DTI images!
      Shell
      •0•2•0•0•Updated Aug 30, 2018Aug 30, 2018

    • slack-logger

      Public archive
      When 10k messages just simply isn't enough.
      JavaScript
      •0•0•0•0•Updated Jul 5, 2018Jul 5, 2018