Repositories list

• panspace

  Public
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes

  fastgenomicsgpu+ 8dnaindexbacteriacompactembeddingdata-curationpangenome+ 1

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

• gs-reasmb

  Public
  Python

  •0•0•0•0•Updated Aug 18, 2024Aug 18, 2024

• panspace-paper

  Public
  snakemake pipeline to reproduce the experiments with panspace on the 661k bacterial dataset.

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• fcgr

  Public
  C++

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024