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Pangenomics with embeddings

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  1. panspace panspace Public

    Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes

    Jupyter Notebook 1

  2. panspace-paper panspace-paper Public

    snakemake pipeline to reproduce the experiments with panspace on the 661k bacterial dataset.

    Jupyter Notebook

  3. fcgr fcgr Public

    C++

  4. gs-reasmb gs-reasmb Public

    Python

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Showing 4 of 4 repositories
  • panspace Public

    Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes

    pg-space/panspace’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Nov 26, 2024
  • gs-reasmb Public
    pg-space/gs-reasmb’s past year of commit activity
    Python 0 0 0 0 Updated Aug 18, 2024
  • panspace-paper Public

    snakemake pipeline to reproduce the experiments with panspace on the 661k bacterial dataset.

    pg-space/panspace-paper’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Aug 12, 2024
  • fcgr Public
    pg-space/fcgr’s past year of commit activity
    C++ 0 0 0 0 Updated Feb 2, 2024

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