Merge pull request #3 from rhoitink/dev

Merge for v0.2.1
rhoitink · Nov 8, 2023 · 6c0a0e2 · 6c0a0e2
2 parents cc72f82 + 5580e12
commit 6c0a0e2
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Showing 3 changed files with 2 additions and 25 deletions.
diff --git a/.github/workflows/auto_release.yml b/.github/workflows/auto_release.yml
diff --git a/src/napari_trackpy/_widget.py b/src/napari_trackpy/_widget.py
@@ -66,12 +66,6 @@ def __init__(self, viewer: napari.viewer.Viewer):
 
         self.run_btn = PushButton(label="Run")
         self.reset_btn = PushButton(enabled=False, label="Reset")
-        self.save_params_btn = PushButton(
-            enabled=False, label="Save tracking parameters"
-        )
-        self.save_tracking_btn = PushButton(
-            enabled=False, label="Save coordinates"
-        )
         self.run_btn = PushButton(label="Run")
         self.run_btn.clicked.connect(self.run_tracking)
         self.reset_btn.clicked.connect(self.reset)
@@ -91,8 +85,6 @@ def __init__(self, viewer: napari.viewer.Viewer):
                 self.max_mass,
                 self.run_btn,
                 self.reset_btn,
-                self.save_params_btn,
-                self.save_tracking_btn,
             ]
         )
 

diff --git a/src/napari_trackpy/_writer.py b/src/napari_trackpy/_writer.py
@@ -16,6 +16,8 @@ def xyz_file_writer(
         )
         header += ' Unit="micrometer"'
 
+    coordinates = coordinates[:, [2, 1, 0]]  # change from ZYX to XYZ
+
     if "particle_tracking_settings" in attributes["metadata"]:
         # save particle tracking settings to txt file
         with open(