Code

object oriented re-write #17

Code

Merged

bcjaeger merged 105 commits intomainropensci/aorsf:mainfrom oopropensci/aorsf:oopCopy head branch name to clipboardOct 3, 2023

+11,891-5,831

Commits

Commits on Sep 12, 2022

• first oop commit

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  4148a77

Commits on Sep 16, 2022

• data object for pointers to arma objects

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• trying to use sample

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  78ef315

Commits on Sep 17, 2022

• rcpp arma sample can only be defined once

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  b4cdd3f

Commits on Sep 18, 2022

• bootstrap and surv classes

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  57191db

Commits on Sep 19, 2022

• informal memory trace check

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  9d48cc7

Commits on Sep 22, 2022

• first oop commit

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  29d581c

• data object for pointers to arma objects

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  b7afb1c

• trying to use sample

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  77bd1a7

• rcpp arma sample can only be defined once

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• bootstrap and surv classes

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• informal memory trace check

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• arma objects causing trouble unless in header

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  e845af1

Commits on Sep 23, 2022

• merged conf

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  62a287b

Commits on Sep 27, 2022

• progress to coxph

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  2813295

Commits on Oct 5, 2022

• learning headers

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  a14681b

Commits on Jun 30, 2023

• non-working cph

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• working cph code

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  010ba14

Commits on Jul 10, 2023

• coxph test passes

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• untested nodesplitstat

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  dfa4c2a

Commits on Jul 11, 2023

• test failing nodesplitstat

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  3ed132f

Commits on Jul 12, 2023

• nodesplitstats code passing lrt tests

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  1f77114

Commits on Jul 14, 2023

• starting to modularize lrt multi

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  110b149

Commits on Aug 6, 2023

• more like ranger data

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• test from home

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  5e75fa9

• getting more specific with Rcpp data transfer

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  b31637f

Commits on Aug 8, 2023

• thinking about trees

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  b58844d

• tinkering with init for trees

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  c9f0672

Commits on Aug 9, 2023

• faster bootstrap samples

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  70b2e6b

Commits on Aug 11, 2023

• handling R function passage

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  c1820fe

Commits on Aug 12, 2023

• getting to coxph in tree grow

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  41504b7

Commits on Aug 14, 2023

• incorporated coxph into grow

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  396f139

• setting up logrank compare

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  6292458

Commits on Aug 15, 2023

• setting up vi pointers

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  37f04fc

Commits on Aug 16, 2023

• already catching bugs! weights in trees now sum to n total

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  52ed250

Commits on Aug 17, 2023

• vi references included, need to make these pointers

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  c70413d

• tree growing do loop setup

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  4971461

Commits on Aug 22, 2023

• tree outputs now stdvecs, bc it seems these are most flexible and reliable

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  283faeb

Commits on Aug 23, 2023

• parallel, very bare bones

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• placeholder ptrs for threads

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  6bf288b

• bug fix on cp sample, n_threads an input, and split_max_stat incorporated

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  8c0af92

Commits on Aug 24, 2023

• bug hunting

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  4c61747

Commits on Aug 25, 2023

• drop the debug log

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• ignore debug log

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• ignore debug log take 2

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• retries included

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• try to ignore output txt file again

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• showprogress and check interrupts

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  61fd7c0

Commits on Aug 26, 2023

• R functions from trees thx to RObjects

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  f231894

Commits on Aug 27, 2023

• prep for prediction

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  4c362b6

• prediction progress; not quite there

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  dae3d3a

Commits on Aug 31, 2023

• oobag functions, needs testing and denom tune

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• predict in threads almost

  Show description for 1418944
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  1418944

Commits on Sep 2, 2023

• separate name for cutpoint sampler

  Show description for 4ac3457
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  4ac3457

• send unique vi vec to each thread, prevent shared memory access problem

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  bca62b2

Commits on Sep 3, 2023

• prep to merge main

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• merge main branch

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• mort pre-computed

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  786ef63

Commits on Sep 4, 2023

• more unique random number generators

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  3315fce

Commits on Sep 5, 2023

• working shell for survival forest

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• bigger shell for ForestSurvival

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• shell for survival trees

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• slowly transferring code to survival classes

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  b372d5b

Commits on Sep 6, 2023

• prep to use arma field for leaf data

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Commits on Sep 7, 2023

• survival subclass functions

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  70dec0e

Commits on Sep 8, 2023

• mute oobag preds from empty trees

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  822846e

Commits on Sep 11, 2023

• almost done separating members into survival

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• done moving attributes to survival class

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  d3a1f48

Commits on Sep 14, 2023

• almost a sliver of vi permute functioning

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  156fa38

• vi permute stable but buggy

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  46809bb

• cant use tree rng to make rng in data class

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  4d4e04a

Commits on Sep 16, 2023

• cleanup, plus eval_oobag_every might work in threads

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  28bf4ea

Commits on Sep 17, 2023

• runs on workstation now (maybe)

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  10e40e7

Commits on Sep 19, 2023

• the merge begins

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  fd169b6

• drop unused node split code

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  22e671a

Commits on Sep 21, 2023

• back from conf

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• no_fit does prevent fit now

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• hiccups from update

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• mort oobag! Still working out workflow of it

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  eeeb141

Commits on Sep 23, 2023

• oob functions allowed

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• much closer to survival::concordance

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  aac2a1c

Commits on Sep 24, 2023

• starting to make verbosity more flexible

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  cb4476c

Commits on Sep 25, 2023

• merging new predict with old

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  9c56aac

Commits on Sep 26, 2023

• the moby dick of bugs has been caught

  Show description for c137536
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• oob leaf preds

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• some support for leaf and non-aggregate preds

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  246ecda

Commits on Sep 27, 2023

• merging new VI with current orsf_vi syntax

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• more trees in the noise/scale tests

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Commits on Sep 28, 2023

• toying with compute_dependence function for Forests

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  4a1b7cf

Commits on Sep 30, 2023

• about to fix pd backend api

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  ba30364

Commits on Oct 1, 2023

• solid progress but need to fix the data restore mechanics

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• about to rework saved values

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• must reset oob denom while doing pd loops

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• core features might be stable again

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• ready to merge

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  1d6efed

Commits on Oct 2, 2023

• adding docs, fix col sample edge case

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  4b602a4

Commits on Oct 3, 2023

• a day of chasing the RNG bug

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  0696ee1

• getting docs updated

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  f8c1f53

• cleaner n_thread doc and option for n_thread=0

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• ignore scratch

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• move scratch.R instead

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• checks for new orsf args

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• draft some release notes

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• doc updates

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• formula tests get a specific file

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