Merge pull request #115 from rseng/update/analysis-2024-04-03

Update from update/analysis-2024-04-03
rseng · Apr 3, 2024 · 59dd21c · 59dd21c
2 parents c2657b0 + bb20567
commit 59dd21c
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Showing 47 changed files with 35,685 additions and 33,187 deletions.
diff --git a/_data/language_counts.json b/_data/language_counts.json
@@ -1,21 +1,21 @@
 {
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+    "Jupyter Notebook": 444,
     "Modelica": 1,
     "Shell": 31,
     "HTML": 92,
     "Perl": 48,
-    "R": 662,
-    "C++": 562,
-    "Java": 103,
+    "R": 666,
+    "C++": 563,
+    "Java": 104,
     "C": 330,
-    "Rust": 33,
+    "Rust": 34,
     "JavaScript": 84,
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-    "MATLAB": 41,
+    "MATLAB": 42,
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diff --git a/_data/repos.json b/_data/repos.json
@@ -19767,7 +19767,65 @@
             "r-package",
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+        "github/rramadeu/AGHmatrix": [],
+        "github/YeoLab/FLARE": [],
+        "github/tkchafin/autostreamtree": [],
+        "github/mecobpsu/bacseq": [],
+        "github/nla-group/fABBA": [
+            "machine-learning",
+            "dimensionality-reduction",
+            "time-series",
+            "time-series-analysis",
+            "time-series-forecasting",
+            "time-series-classification",
+            "time-series-clustering",
+            "symbolic-aggregate-approximation",
+            "symbolic-representation"
+        ],
+        "github/OPUS-MaLab/opus_fold3": [],
+        "github/ncbi/SRPRISM": [],
+        "github/mlegr/EqualISER": [],
+        "github/JulienPeloton/s4cmb": [
+            "instrument",
+            "cmb",
+            "systematics",
+            "simulation"
+        ],
+        "github/ClaraLage/Portfolio-Transition": [],
+        "github/Yu-Group/simChef": [],
+        "github/HofstadterTools/HofstadterTools": [
+            "band-theory",
+            "condensed-matter-physics",
+            "electromagnetism",
+            "fractals",
+            "mathematical-physics",
+            "quantum-hall-effect",
+            "quantum-physics",
+            "theoretical-physics",
+            "topological-materials",
+            "topological-order"
+        ],
+        "github/Tomcxf/FASTdRNA": [],
+        "github/shaelebrown/TDApplied": [],
+        "github/hendr1km/dropout": [],
+        "github/Pometry/Raphtory": [
+            "graph",
+            "graph-algorithms",
+            "graph-analysis",
+            "graph-theory",
+            "graphviz",
+            "python",
+            "rust",
+            "temporal-networks",
+            "analytics",
+            "embeddable-database",
+            "graph-database",
+            "time-series"
+        ],
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+        "github/VChristiaens/MINDS": [],
+        "github/AndresRTejedor/Mold": []
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@@ -25175,7 +25233,26 @@
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         "github/Open-Minds-Lab/MRdataset": "Python",
         "github/ahudde/greeks": "R",
-        "github/Jashcraf/poke": "Jupyter Notebook"
+        "github/Jashcraf/poke": "Jupyter Notebook",
+        "github/rramadeu/AGHmatrix": "R",
+        "github/YeoLab/FLARE": "Python",
+        "github/tkchafin/autostreamtree": "Python",
+        "github/mecobpsu/bacseq": "Java",
+        "github/nla-group/fABBA": "Python",
+        "github/OPUS-MaLab/opus_fold3": "Python",
+        "github/ncbi/SRPRISM": "C++",
+        "github/mlegr/EqualISER": "MATLAB",
+        "github/JulienPeloton/s4cmb": "Python",
+        "github/ClaraLage/Portfolio-Transition": "Python",
+        "github/Yu-Group/simChef": "R",
+        "github/HofstadterTools/HofstadterTools": "Python",
+        "github/Tomcxf/FASTdRNA": "Python",
+        "github/shaelebrown/TDApplied": "R",
+        "github/hendr1km/dropout": "R",
+        "github/Pometry/Raphtory": "Rust",
+        "github/rkingsbury/pyEQL": "Python",
+        "github/VChristiaens/MINDS": "Jupyter Notebook",
+        "github/AndresRTejedor/Mold": "Fortran"
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@@ -30583,7 +30660,26 @@
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         "github/ahudde/greeks": "https://github.com/ahudde/greeks",
-        "github/Jashcraf/poke": "https://github.com/Jashcraf/poke"
+        "github/Jashcraf/poke": "https://github.com/Jashcraf/poke",
+        "github/rramadeu/AGHmatrix": "https://github.com/rramadeu/AGHmatrix",
+        "github/YeoLab/FLARE": "https://github.com/YeoLab/FLARE",
+        "github/tkchafin/autostreamtree": "https://github.com/tkchafin/autostreamtree",
+        "github/mecobpsu/bacseq": "https://github.com/tmrcpsu/bacseq",
+        "github/nla-group/fABBA": "https://github.com/nla-group/fABBA",
+        "github/OPUS-MaLab/opus_fold3": "https://github.com/OPUS-MaLab/opus_fold3",
+        "github/ncbi/SRPRISM": "https://github.com/ncbi/SRPRISM",
+        "github/mlegr/EqualISER": "https://github.com/mlegr/EqualISER",
+        "github/JulienPeloton/s4cmb": "https://github.com/JulienPeloton/s4cmb",
+        "github/ClaraLage/Portfolio-Transition": "https://github.com/ClaraLage/Portfolio-Transition",
+        "github/Yu-Group/simChef": "https://github.com/Yu-Group/simChef",
+        "github/HofstadterTools/HofstadterTools": "https://github.com/HofstadterTools/HofstadterTools",
+        "github/Tomcxf/FASTdRNA": "https://github.com/Tomcxf/FASTdRNA",
+        "github/shaelebrown/TDApplied": "https://github.com/shaelebrown/TDApplied",
+        "github/hendr1km/dropout": "https://github.com/hendr1km/dropout",
+        "github/Pometry/Raphtory": "https://github.com/Pometry/Raphtory",
+        "github/rkingsbury/pyEQL": "https://github.com/KingsburyLab/pyEQL",
+        "github/VChristiaens/MINDS": "https://github.com/VChristiaens/MINDS",
+        "github/AndresRTejedor/Mold": "https://github.com/AndresRTejedor/Mold"
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@@ -35991,6 +36087,25 @@
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         "github/Open-Minds-Lab/MRdataset": "MRdataset : unified interface to various neuroimaging dataset formats",
         "github/ahudde/greeks": "Sensitivities of Prices of Financial Options and Implied Volatilites",
-        "github/Jashcraf/poke": "Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python"
+        "github/Jashcraf/poke": "Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python",
+        "github/rramadeu/AGHmatrix": "An R package to compute relationship matrices for diploid and autopolyploid species",
+        "github/YeoLab/FLARE": "RNA edit detection (SAILOR) and peak calling (FLARE)",
+        "github/tkchafin/autostreamtree": "Stream trees for SNP datasets",
+        "github/mecobpsu/bacseq": null,
+        "github/nla-group/fABBA": "A Python library for the fast symbolic approximation of time series",
+        "github/OPUS-MaLab/opus_fold3": null,
+        "github/ncbi/SRPRISM": "Short Read Alignment Tool",
+        "github/mlegr/EqualISER": null,
+        "github/JulienPeloton/s4cmb": "Simulation of instrumental systematic effects in the context of CMB observations",
+        "github/ClaraLage/Portfolio-Transition": "https://hal.archives-ouvertes.fr/hal-03423114/",
+        "github/Yu-Group/simChef": "An R package to facilitate PCS simulation studies.",
+        "github/HofstadterTools/HofstadterTools": "A Python package for analyzing the Hofstadter model.",
+        "github/Tomcxf/FASTdRNA": "FASTdRNA is a workflow for analysis of ONT direct RNA seq dataset",
+        "github/shaelebrown/TDApplied": "An R package for statistics and machine learning with persistence diagrams",
+        "github/hendr1km/dropout": "tools for dropout analysis when working with survey data",
+        "github/Pometry/Raphtory": "Blazingly fast, vectorised, parallel, and scalable temporal graph engine for Rust, Python and JavaScript",
+        "github/rkingsbury/pyEQL": "A Python library for solution chemistry",
+        "github/VChristiaens/MINDS": "MINDS pipeline for the reduction of MIRI-MRS data",
+        "github/AndresRTejedor/Mold": "Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques"
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diff --git a/_data/repos_counts_languages.json b/_data/repos_counts_languages.json
@@ -1,6 +1,6 @@
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diff --git a/_data/stats.json b/_data/stats.json
@@ -1,9 +1,9 @@
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diff --git a/_repos/github/ClaraLage/Portfolio-Transition/requirements.txt b/_repos/github/ClaraLage/Portfolio-Transition/requirements.txt
@@ -0,0 +1,5 @@
+numpy~=1.22.2
+matplotlib~=3.5.1
+cvxopt~=1.2.7
+scipy~=1.7.3
+pandas~=1.4.0
diff --git a/_repos/github/JulienPeloton/s4cmb/README.md b/_repos/github/JulienPeloton/s4cmb/README.md
@@ -0,0 +1,67 @@
+---
+title: github/JulienPeloton/s4cmb
+layout: repo
+tipue_search_active: true
+exclude_from_search: true
+---
+# Software Credit
+
+|Manager|Name|Credit|
+|-------|----|------|
+|pypi|[numpy](https://www.numpy.org)|0.235|
+|pypi|[matplotlib](https://matplotlib.org)|0.126|
+|pypi|[tomli](https://pypi.org/project/tomli)|0.113|
+|pypi|[ephem](http://rhodesmill.org/pyephem/)|0.11|
+|pypi|[mpi4py](https://github.com/mpi4py/mpi4py/)|0.11|
+|pypi|[requests](https://pypi.org/project/requests)|0.041|
+|pypi|[PyYAML](https://pypi.org/project/PyYAML)|0.029|
+|pypi|[coverage](https://github.com/nedbat/coveragepy)|0.028|
+|pypi|[docopt](https://pypi.org/project/docopt)|0.027|
+|pypi|[astropy](https://www.astropy.org/)|0.022|
+|pypi|[pytest](https://pypi.org/project/pytest)|0.02|
+|pypi|[scipy](https://www.scipy.org)|0.017|
+|pypi|[pytest-doctestplus](https://pypi.org/project/pytest-doctestplus)|0.016|
+|pypi|[pytest-cython](https://pypi.org/project/pytest-cython)|0.014|
+|requirements.txt|github/JulienPeloton/s4cmb|0.01|
+|pypi|[ipython](https://ipython.org)|0.005|
+|pypi|[sgp4](https://github.com/brandon-rhodes/python-sgp4)|0.002|
+|pypi|[skyfield](http://github.com/brandon-rhodes/python-skyfield/)|0.002|
+|pypi|[threadpoolctl](https://pypi.org/project/threadpoolctl)|0.002|
+|pypi|[pytest-xdist](https://pypi.org/project/pytest-xdist)|0.002|
+|pypi|[pytest-astropy](https://pypi.org/project/pytest-astropy)|0.002|
+|pypi|[pytest-astropy-header](https://pypi.org/project/pytest-astropy-header)|0.002|
+|pypi|[Jinja2](https://pypi.org/project/Jinja2)|0.002|
+|pypi|[sphinx-design](https://pypi.org/project/sphinx-design)|0.002|
+|pypi|[sphinx-changelog](https://pypi.org/project/sphinx-changelog)|0.002|
+|pypi|[sphinx-astropy](https://pypi.org/project/sphinx-astropy)|0.002|
+|pypi|[sphinx](https://pypi.org/project/sphinx)|0.002|
+|pypi|[pre-commit](https://pypi.org/project/pre-commit)|0.002|
+|pypi|[s3fs](https://pypi.org/project/s3fs)|0.002|
+|pypi|[fsspec](https://pypi.org/project/fsspec)|0.002|
+|pypi|[typing-extensions](https://pypi.org/project/typing-extensions)|0.002|
+|pypi|[bottleneck](https://pypi.org/project/bottleneck)|0.002|
+|pypi|[asdf-astropy](https://pypi.org/project/asdf-astropy)|0.002|
+|pypi|[mpmath](https://pypi.org/project/mpmath)|0.002|
+|pypi|[jplephem](https://pypi.org/project/jplephem)|0.002|
+|pypi|[pytz](https://pypi.org/project/pytz)|0.002|
+|pypi|[sortedcontainers](https://pypi.org/project/sortedcontainers)|0.002|
+|pypi|[pandas](https://pypi.org/project/pandas)|0.002|
+|pypi|[bleach](https://pypi.org/project/bleach)|0.002|
+|pypi|[html5lib](https://pypi.org/project/html5lib)|0.002|
+|pypi|[beautifulsoup4](https://pypi.org/project/beautifulsoup4)|0.002|
+|pypi|[pyarrow](https://pypi.org/project/pyarrow)|0.002|
+|pypi|[h5py](https://pypi.org/project/h5py)|0.002|
+|pypi|[dask](https://pypi.org/project/dask)|0.002|
+|pypi|[certifi](https://pypi.org/project/certifi)|0.002|
+|pypi|[packaging](https://pypi.org/project/packaging)|0.002|
+|pypi|[astropy-iers-data](https://pypi.org/project/astropy-iers-data)|0.002|
+|pypi|[pyerfa](https://pypi.org/project/pyerfa)|0.002|
+|pypi|[graphviz](https://pypi.org/project/graphviz)|0.002|
+|pypi|[healpy](http://github.com/healpy)|0.001|
+|pypi|[coveralls](http://github.com/TheKevJames/coveralls-python)|0.001|
+
+
+> Note that credit values are rounded and expanded (so shared dependencies are represented as one record) and may not add to 1.0. Rounded values that hit zero are removed.
+
+
+- Generated by [CiteLang](https://github.com/vsoch/citelang)
diff --git a/_repos/github/JulienPeloton/s4cmb/badge.png b/_repos/github/JulienPeloton/s4cmb/badge.png