[pre-commit.ci] pre-commit autoupdate (#585)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.3.5 → v0.4.2](astral-sh/ruff-pre-commit@v0.3.5...v0.4.2)
- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.10.0](pre-commit/mirrors-mypy@v1.9.0...v1.10.0)

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

.pre-commit-config.yaml

@@ -11,7 +11,7 @@ repos:
       hooks:
           - id: prettier
     - repo: https://github.com/astral-sh/ruff-pre-commit
-      rev: v0.3.5
+      rev: v0.4.2
       hooks:
           - id: ruff
             args: [--fix, --exit-non-zero-on-fix, --unsafe-fixes]
@@ -27,7 +27,7 @@ repos:
           - id: trailing-whitespace
           - id: check-case-conflict
     - repo: https://github.com/pre-commit/mirrors-mypy
-      rev: v1.9.0
+      rev: v1.10.0
       hooks:
           - id: mypy
             args: [--no-strict-optional, --ignore-missing-imports]

pertpy/tools/_coda/_base_coda.py

@@ -849,10 +849,10 @@ def summary(self, data: AnnData | MuData, extended: bool = False, modality_key:
         table.add_column("Name", justify="left", style="cyan")
         table.add_column("Value", justify="left")
         table.add_row("Data", "Data: %d samples, %d cell types" % data_dims)
-        table.add_row("Reference cell type", "%s" % str(sample_adata.uns["scCODA_params"]["reference_cell_type"]))
-        table.add_row("Formula", "%s" % sample_adata.uns["scCODA_params"]["formula"])
+        table.add_row("Reference cell type", "{}".format(str(sample_adata.uns["scCODA_params"]["reference_cell_type"])))
+        table.add_row("Formula", "{}".format(sample_adata.uns["scCODA_params"]["formula"]))
         if extended:
-            table.add_row("Reference index", "%s" % str(sample_adata.uns["scCODA_params"]["reference_index"]))
+            table.add_row("Reference index", "{}".format(str(sample_adata.uns["scCODA_params"]["reference_index"])))
             if select_type == "spikeslab":
                 table.add_row(
                     "Spike-and-slab threshold",