Skip to content

Issues: scverse/pertpy

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

36 Open 219 Closed
36 Open 219 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Design formula affects design matrix with PyDEseq2 bug Something isn't working
#690 opened Dec 19, 2024 by emdann
@grst
2
Mixscape classification bug Something isn't working
#688 opened Dec 13, 2024 by NguyenLuongHa
@Lilly-May
2
Mean expression can be negative in _get_perturbation_markers bug Something isn't working
#684 opened Dec 10, 2024 by Zethson
@Lilly-May
RRuntimeError: Error in colSums(x) : 'x' must be numeric bug Something isn't working
#681 opened Nov 29, 2024 by ahmed-agami
3
Milo neighborhood groups as in MiloR enhancement New feature or request
#680 opened Nov 21, 2024 by MaximilianNuber
Different results Mixscape from PertPy vs Seurat bug Something isn't working
#679 opened Nov 12, 2024 by albacorp
@Lilly-May
8
target col naming bug Something isn't working
#673 opened Oct 17, 2024 by Zethson
Reproducibility of mixscape bug Something isn't working
#671 opened Oct 16, 2024 by jesswhitts
1
@Zethson @Lilly-May
7
Dialogue feature space enhancement New feature or request
#668 opened Oct 13, 2024 by Nusob888
@Zethson
1
Improve UX for metadata module enhancement New feature or request
#664 opened Sep 29, 2024 by Lilly-May
Implement other CRISPR guide assignment methods enhancement New feature or request
#657 opened Sep 19, 2024 by stefanpeidli
@stefanpeidli
1
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
1
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
3
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
Extend PyDESeq2 class to support arbitrary contrasts and designs enhancement New feature or request
#610 opened May 27, 2024 by grst
1
@grst
3
Expression prediction tutorial enhancement New feature or request
#587 opened May 2, 2024 by Zethson
1 of 3 tasks
@Zethson @Hrovatin @eroell
1
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Add dataloader for sciplex-GxE enhancement New feature or request
#556 opened Mar 11, 2024 by Zethson
Add dataloader for Jiang et al enhancement New feature or request
#542 opened Feb 20, 2024 by Zethson
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.