Skip to content

Commit

Permalink
auto-generated readme
Browse files Browse the repository at this point in the history
  • Loading branch information
geertvangeest committed Aug 11, 2024
1 parent ee8e2d6 commit 30eaff7
Showing 1 changed file with 15 additions and 4 deletions.
19 changes: 15 additions & 4 deletions README.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [SQL](#sql)
- [C/C++](#c/c++)
- [Rust](#rust)
- [SPARQL](#sparql)
- [Computational methods and pipelines](#computational-methods-and-pipelines)
- [Containerization](#containerization)
- [Galaxy](#galaxy)
Expand Down Expand Up @@ -389,7 +390,6 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
### SQL

- [**Data Carpentry** datacarpentry/sql-ecology-lesson](https://github.com/datacarpentry/sql-ecology-lesson) | [website](http://datacarpentry.github.io/sql-ecology-lesson)
- [**Department of Bioinformatics - BiGCaT** BiGCAT-UM/SPARQLTutorialBioSB2019](https://github.com/bigcat-um/SPARQLTutorialBioSB2019)

### C/C++

Expand All @@ -400,6 +400,12 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**Google** google/comprehensive-rust](https://github.com/google/comprehensive-rust) | [website](https://google.github.io/comprehensive-rust/)
- [**The Rust Programming Language** rust-lang/rustlings](https://github.com/rust-lang/rustlings) | [website](https://rustlings.cool)

### SPARQL

- [**SIB Swiss Institute of Bioinformatics** sib-swiss/sparql-training](https://github.com/sib-swiss/sparql-training)
- [**Department of Bioinformatics - BiGCaT** BiGCAT-UM/SPARQLTutorialBioSB2019](https://github.com/bigcat-um/SPARQLTutorialBioSB2019)
- [**SIB Swiss Institute of Bioinformatics** sib-swiss/SPARQL_course](https://github.com/sib-swiss/SPARQL_course)

## Computational methods and pipelines


Expand Down Expand Up @@ -480,6 +486,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**Data Carpentry** datacarpentry/organization-genomics](https://github.com/datacarpentry/organization-genomics) | [website](https://datacarpentry.org/organization-genomics)
- [**The Gulbenkian Training Programme in Bioinformatics** GTPB/ELB19F](https://github.com/gtpb/ELB19F) | [website](https://gtpb.github.io/ELB19F/)
- [**The McDonnell Genome Institute** genome/bfx-workshop](https://github.com/genome/bfx-workshop)
- [**rapidspeciation** rapidspeciation/biodiversity_genomics_course](https://github.com/rapidspeciation/biodiversity_genomics_course)

### Next generation sequencing

Expand All @@ -493,6 +500,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-ngsintro](https://github.com/NBISweden/workshop-ngsintro) | [website](https://NBISweden.github.io/workshop-ngsintro)
- [**Institut Français de Bioinformatique (IFB)** IFB-ElixirFr/EBAII](https://github.com/IFB-ElixirFr/EBAII) | [website](https://ifb-elixirfr.github.io/EBAII/)
- [**Cloud-SPAN** Cloud-SPAN/00genomics](https://github.com/cloud-span/00genomics) | [website](https://cloud-span.github.io/00genomics/)
- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-ngsintro](https://github.com/nbisweden/workshop-ngsintro/) | [website](https://NBISweden.github.io/workshop-ngsintro)

### Transcriptomics

Expand Down Expand Up @@ -566,6 +574,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/workshop-pgip](https://github.com/NBISweden/workshop-pgip) | [website](https://nbisweden.github.io/workshop-pgip/)
- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop](https://github.com/ucdavis-bioinformatics-training/2020-Variant_Analysis_Workshop)
- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2021-July-Genome-Wide-Association-Studies](https://github.com/ucdavis-bioinformatics-training/2021-July-Genome-Wide-Association-Studies)
- [**Nina Overgaard Therkildsen** nt246/lcwgs-guide-tutorial](https://github.com/nt246/lcwgs-guide-tutorial)

### ChIP-seq

Expand All @@ -590,10 +599,12 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
### Genome annotation

- [**Katharina Hoff** KatharinaHoff/BRAKER-TSEBRA-Workshop](https://github.com/KatharinaHoff/BRAKER-TSEBRA-Workshop)
- [**Katharina Hoff** KatharinaHoff/BRAKER-TSEBRA-Workshop](https://github.com/KatharinaHoff/BRAKER-TSEBRA-Workshop/tree/main)

### Genome assembly

- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop](https://github.com/ucdavis-bioinformatics-training/2020-Genome_Assembly_Workshop)
- [**ebp-nor** ebp-nor/genome-assembly-workshop-2023](https://github.com/ebp-nor/genome-assembly-workshop-2023)

### Metagenomics

Expand Down Expand Up @@ -643,6 +654,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**SIB Swiss Institute of Bioinformatics** sib-swiss/NGS-longreads-training](https://github.com/sib-swiss/NGS-longreads-training) | [website](https://sib-swiss.github.io/NGS-longreads-training/)
- [**UC Davis Bioinformatics Core Training Page** ucdavis-bioinformatics-training/2021-August-Iso-Seq](https://github.com/ucdavis-bioinformatics-training/2021-August-Iso-Seq)
- [**Ryan Wick** rrwick/Perfect-bacterial-genome-tutorial](https://github.com/rrwick/Perfect-bacterial-genome-tutorial)
- [**Tim Kahlke** timkahlke/LongRead_tutorials](https://github.com/timkahlke/LongRead_tutorials/)

### Metabolomics

Expand Down Expand Up @@ -672,8 +684,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma
- [**carpentries-incubator** carpentries-incubator/capstone-novice-spreadsheet-biblio](https://github.com/carpentries-incubator/capstone-novice-spreadsheet-biblio) | [website](http://carpentries-incubator.github.io/capstone-novice-spreadsheet-biblio/)
- [**ELIXIR Belgium** ELIXIR-Belgium/rdm-guide](https://github.com/ELIXIR-Belgium/rdm-guide) | [website](https://rdm.elixir-belgium.org)
- [**ELIXIR Europe** elixir-europe/rdmkit](https://github.com/elixir-europe/rdmkit) | [website](https://rdmkit.elixir-europe.org)
- [**Korbinian Bösl** ELIXIR-Norway-Training/DMP-writing-workshop](https://github.com/korbinib/DMP-writing-workshop) | [website](https://elixir.no)
- [**SIB Swiss Institute of Bioinformatics** sib-swiss/sparql-training](https://github.com/sib-swiss/sparql-training)
- [**ELIXIR-Norway Training** ELIXIR-Norway-Training/DMP-writing-workshop](https://github.com/ELIXIR-Norway-Training/DMP-writing-workshop) | [website](https://elixir.no)
- [**OpenSciency** opensciency/sprint-content](https://github.com/opensciency/sprint-content) | [website](https://opensciency.github.io/sprint-content/)
- [**SIB Swiss Institute of Bioinformatics** sib-swiss/ena-seqdata-training](https://github.com/sib-swiss/ena-seqdata-training) | [website](https://sib-swiss.github.io/ena-seqdata-training/)
- [**VIB Technologies: Bioinformatics and software projects** vibbits/rdm-introductory-course](https://github.com/vibbits/rdm-introductory-course)
Expand All @@ -692,7 +703,7 @@ Below you'll find a curated list of **bioinformatics training material**. All ma

- [**carpentries-incubator** carpentries-incubator/fair-bio-practice](https://github.com/carpentries-incubator/fair-bio-practice) | [website](https://carpentries-incubator.github.io/fair-bio-practice/)
- [**carpentries-incubator** carpentries-incubator/fair-for-leaders](https://github.com/carpentries-incubator/fair-for-leaders) | [website](https://carpentries-incubator.github.io/fair-for-leaders/)
- [**elixir-oslo** ELIXIR-Norway-Training/fair-dm-lifesci-june-2022](https://github.com/elixir-oslo/fair-dm-lifesci-june-2022)
- [**ELIXIR-Norway Training** ELIXIR-Norway-Training/fair-dm-lifesci-june-2022](https://github.com/ELIXIR-Norway-Training/fair-dm-lifesci-june-2022)
- [**FAIRplus** FAIRplus/the-fair-cookbook](https://github.com/FAIRplus/the-fair-cookbook) | [website](https://faircookbook.elixir-europe.org)
- [**NBIS - National Bioinformatics Infrastructure Sweden** NBISweden/module-repository-submission-dm-practices](https://github.com/NBISweden/module-repository-submission-dm-practices) | [website](https://nbisweden.github.io/module-repository-submission-dm-practices/)
- [**ELIXIR Europe Training** elixir-europe-training/ELIXIR-TrP-FAIR-training-handbook](https://github.com/elixir-europe-training/ELIXIR-TrP-FAIR-training-handbook) | [website](https://elixir-europe-training.github.io/ELIXIR-TrP-FAIR-training-handbook/)
Expand Down

0 comments on commit 30eaff7

Please sign in to comment.