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Metabuli v1.0.7
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@jaebeom-kim jaebeom-kim released this 12 Sep 05:02
· 54 commits to master since this release
1.0.7
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Learn about vigilant mode.

Metabuli became faster than v1.0.6

  • Dataset

    • Query: SRR24315757_1.fastq, SRR24315757_2.fastq
      • 22,107,398 paired-end reads
      • 6,632,219,400 nt in total
    • DB: GTDB
      • Complete Genome or Chromosome level assemblies
      • CheckM completeness > 90 and contamination < 5
      • 36,203 genomes from 8,465 species

  • Windows: ~8.3 times faster

    • Machine: Intel(R) Core(TM) i9-9900 CPU, 32GB RAM
    • --max-ram: 32
    • --threads: 8
    • v1.0.6: 825s for the first 587,593 reads (2.7% of all). Total time not measured
    • v1.0.7: 100s for the first 587,593 reads. 1h 7m 22s in total

  • MacOS: ~1.7 times faster

    • Machine: MacBook Pro 14-inch 2023, M2 Pro chip, 32GB RAM
    • --max-ram: 32
    • --threads: 8
    • v1.0.6: 71m 34s
    • v1.0.7: 42m 58s

  • Linux: ~1.3 times faster

    • Machine: A server with 64-core AMD EPYC 7742 CPU and 1 TB of RAM
    • --max-ram : 128
    • --threads : 32
      • v1.0.6: 13m 34s
      • v1.0.7: 9m 58s
    • --threads : 64
      • v1.0.6: 9m 36s
      • v1.0.7: 7m 19s
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