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stjude / proteinpaint Public

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Tentative implementation for adjusting of confounding factors using edgeR#2539

Merged

xzhou82 merged 18 commits intomasterstjude/proteinpaint:masterfrom DE_confstjude/proteinpaint:DE_confCopy head branch name to clipboard

Jan 15, 2025

+184-188

Conversation Commits18 (18)Checks Files changed

Commits

Commits on Jan 14, 2025

Aded termdb to client side
robinpaul85
committed
Added server side
robinpaul85
committed
Parsing sample ID confounding data
robinpaul85
committed
Passed confounding factor to edgeR
robinpaul85
committed
Added design matric in edgeR
robinpaul85
committed
Tentative implementation of adjustement of confounding factors using edgeR
robinpaul85
committed
Adding replace/remove option for confounding factor
robinpaul85
committed
Small change in types
robinpaul85
committed
Small change in edgeR script
robinpaul85
committed
Printing case and control lists from edgeR script
robinpaul85
committed
Show confounding factors only when edgeR is selected as the method
robinpaul85
committed
Using glmfit and glmLRT in edgeR
robinpaul85
committed
Small change in model.matrix
robinpaul85
committed
Fixed order of confounding factors
robinpaul85
committed
Changed y
robinpaul85
committed
Added comments and benchamrking to edgeR script
robinpaul85
committed
Removed duplicate else statement for wilcoxon test
robinpaul85
committed
Improved readability of edgeR code
robinpaul85
committed

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