Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project
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Updated
Jul 30, 2024 - Jupyter Notebook
Bioinformatics workflow that identifies mutational overlaps using data from the 1000 genomes project
Pipeline with lots of user input for processing SNP data towards ADMIXTURE and/or imputation
1000 Genomes Project Metadata R Package
📙 Explore 1000 Genomes variant data with JavaScript.
This repository provides tools to train and evaluate the Genome-AC-GAN model for generating realistic artificial human genomes.
Concordance Validation across Experiments
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
GWAS Pre-Processing Pipeline
A Python script that generate population genotype frequency file from 1000G data
Snakemake workflow to test μ-PBWT against PBWT and Syllable-PBWT
A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.
Predicting 1000 Genomes population using PCA and a random forest classifier
BIOI500 - Advanced Bioinformatics final project at Loyola University Chicago.
Find risk snp in the LD region of GWAS snps by convolutional neural network
echoverse module: LD downloading and processing
An extendable parser for vcf files written in C++
A PBWT-based light index for UK Biobank scale genotype data.
Visualizing Linkage Disequilibrium using 1000 Genomes Data
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