Poissonfish / iPat Star 11 Code Issues Pull requests iPat allows you to perform GWAS and GS with drags and clicks! gui gwas genomics genome analysis vcf hapmap genome-analysis genomic-data-analysis gene-prediction association-studies ipat Updated Jul 12, 2022 Java
krishnam / vcf2hmp Star 8 Code Issues Pull requests convert VCF to HMP format tool convert vcf hapmap hmp Updated Aug 18, 2020 Python
npredey / GeneticAncestryTool Star 3 Code Issues Pull requests plink pca principal-component-analysis hapmap bioinformatics-tool gwas-tools Updated Apr 27, 2018 Python
AnstMikh / DNA Star 2 Code Issues Pull requests pipeline: from sra, bed, vcf to plink python r pipeline plink samtools hapmap bcftools sratoolkit plink2 angsd Updated Jul 26, 2021 Jupyter Notebook
tbrunetti / CoVE Star 1 Code Issues Pull requests Concordance Validation across Experiments snps validation pipeline array tgp hapmap concordance 1000genomes Updated Nov 21, 2017
jlboat / hapmap_to_qtl2 Star 0 Code Issues Pull requests Convert HapMap file into a useable R qtl2 genotype file python hapmap qtl-analyses qtl-mapping Updated Aug 16, 2022 Python